Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0078
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)                  31   1.1  
SB_22641| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_27803| Best HMM Match : Pkinase (HMM E-Value=2.1e-08)               28   8.1  
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)
          Length = 470

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 675 KPGFQNRNILMNCHSKEAFKCISHYDSPLY 586
           + G +N N+L++ +S+    C  HY+ PL+
Sbjct: 142 RTGNENNNLLLSVYSRSTEVCQKHYEKPLF 171


>SB_22641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 402 IGKLVPSTIQLKIYLHKNETNYTTRP*TASGTNNTLPH 515
           I +++ + + +K Y+H    N TT+  T + TNNT  H
Sbjct: 143 IREIIQTNVSVKAYIH----NQTTKQTTPNNTNNTKQH 176


>SB_27803| Best HMM Match : Pkinase (HMM E-Value=2.1e-08)
          Length = 318

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 393 HLYIGKLVPSTIQLKIYLHKNETNYTTRP*TASGTNNTLPHAQNI 527
           H  +G  VPS +Q K        NY       +G N  LPHA N+
Sbjct: 119 HDVLGTPVPSILQ-KFKNKSRHMNYNFPQKKGTGINKLLPHASNM 162


>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -2

Query: 237  VYKYLLFYIVALIFVMFNVLFCVLWNTLPNCKY 139
            ++   +FYI+ ++ ++  +LF V++ T+ N KY
Sbjct: 920  IFILTIFYIIIIVVIVL-ILFAVVYMTIINAKY 951


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,616,690
Number of Sequences: 59808
Number of extensions: 358334
Number of successful extensions: 660
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)