Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0076
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)                  28   4.2  
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)               28   5.6  
SB_59035| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)
          Length = 955

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 173 HFRELFLTPSEL*TLRLINNSKNMPTCMRDIDPDLIMLIINKW 301
           H     + P+ + TL+    S   PT     DPD+    I+KW
Sbjct: 100 HDESTHMAPTAISTLQTTTTSTTTPTTPHSRDPDISHTKISKW 142


>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
          Length = 599

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 413 FPYQKENKTSFEMNKLQMSKRMLRLRDRLR 324
           F ++ + K +FE  +L++ KR   L+D+L+
Sbjct: 89  FTFEDKRKQNFEKGRLELEKRRQDLQDKLK 118


>SB_59035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 461 CALQHSFEILLLEIDFFPYQKENKTSFEMNKLQMSKRM 348
           C+   S E+L+L +    ++ ++KTSF  +  Q   RM
Sbjct: 62  CSGDRSKEVLVLRLSMSKWEYDSKTSFHCDNAQGHHRM 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,733,568
Number of Sequences: 59808
Number of extensions: 269824
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)