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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0073
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)          34   0.072
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          33   0.13 
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          33   0.13 
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                33   0.22 
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)                32   0.29 
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)          32   0.29 
SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)                  31   0.67 
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          31   0.67 
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)          30   1.2  
SB_34641| Best HMM Match : Mucin (HMM E-Value=4.3)                     30   1.2  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)          29   2.1  
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)           29   2.1  
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    29   2.1  
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)          29   2.7  
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                29   2.7  
SB_45816| Best HMM Match : Exo_endo_phos (HMM E-Value=0.004)           29   3.6  
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)                     29   3.6  
SB_23397| Best HMM Match : DSL (HMM E-Value=0.00011)                   29   3.6  
SB_14554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_3501| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)                 29   3.6  
SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_24702| Best HMM Match : C1_4 (HMM E-Value=0.98)                     29   3.6  
SB_22215| Best HMM Match : Rib_hydrolayse (HMM E-Value=0.035)          29   3.6  
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)                 28   6.3  
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)                    28   6.3  
SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)                   27   8.3  
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)                   27   8.3  

>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
          Length = 772

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 283 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDC 432
           A+ N  +  +   IKP        C  G   C +  CI + L+C+G+  C
Sbjct: 67  AIANVSITTRSCAIKPTFSFPGHSCGSGEFQCDNGKCIRKNLYCDGDFAC 116


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
           C+     C D  C+    FCNGE DC
Sbjct: 74  CRSAEFKCPDGKCVHPSKFCNGESDC 99



 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 373 ACGDSTCIERGLFCNGEKDC 432
           AC D TC+   L CNG  DC
Sbjct: 117 ACADGTCVTWSLTCNGVSDC 136


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
           C+     C D  C+    FCNGE DC
Sbjct: 74  CRSAEFKCPDGKCVHPSKFCNGESDC 99



 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 373 ACGDSTCIERGLFCNGEKDC 432
           AC D TC+   L CNG  DC
Sbjct: 117 ACADGTCVTWSLTCNGVSDC 136


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 355  CQDGFLACGDSTCIERGLFCNGEKDC 432
            C DG  +C D  CI R   C+G  DC
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDC 3232



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 355  CQDGFLACGDSTCIERGLFCNGEKDC 432
            C     AC +  CI   L C+G+ DC
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDC 2395



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 355  CQDGFLACGDSTCIERGLFCNGEKDC 432
            C     AC    C+ +   C+G+ DC
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDC 2193



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 349 PLCQDGFLACGDSTCIERGLFCNGEKDC 432
           P C  G   C +  CI     C+GE DC
Sbjct: 823 PPCSAGKFTCKNGHCISLRWKCDGENDC 850



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 355  CQDGFLACGDSTCIERGLFCNGEKDC 432
            C+ G  +C +  CI     C+ E DC
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDC 2234



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
           C      C +  CI +   C+GE DC
Sbjct: 47  CPPTKFLCANGMCIPKSAVCDGENDC 72


>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +1

Query: 229 LPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGL 408
           +PGRF   +     D  D  +NC+   +           E +C DG      + C+ R  
Sbjct: 436 IPGRFRCDHRSDCLDGSDE-QNCQNVTRPTPPPVKCRKNERMCADG------NGCVHRRW 488

Query: 409 FCNGEKDC 432
            C+GE+DC
Sbjct: 489 ICDGERDC 496



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
           C      C +S C+     C+GE DC
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDC 368


>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
          Length = 622

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
           C +    C +  C++RGL C+G+K C
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKAC 208



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/76 (23%), Positives = 26/76 (34%)
 Frame = +1

Query: 205 CLGNTSYTLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGD 384
           C     + LPG   L  ++  C+    VK   L + ++        +   C      C  
Sbjct: 170 CAVQPPFALPGHECLE-DEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSCPSNMFLCPS 228

Query: 385 STCIERGLFCNGEKDC 432
             CI     CN E DC
Sbjct: 229 GECIPTTALCNNENDC 244


>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
          Length = 106

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
           C      C D TCI+R   CNG+ DC
Sbjct: 4   CPGSKYECRDGTCIDRNEHCNGKIDC 29


>SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 17/68 (25%), Positives = 27/68 (39%)
 Frame = +1

Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
           T P +   R+EKQ C W+D     K+      IKP  + +   C     +  + T +   
Sbjct: 524 TTPSQTAQRFEKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 581

Query: 406 LFCNGEKD 429
             C+   D
Sbjct: 582 YICDHSVD 589


>SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)
          Length = 979

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 17/68 (25%), Positives = 27/68 (39%)
 Frame = +1

Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
           T P +   R+EKQ C W+D     K+      IKP  + +   C     +  + T +   
Sbjct: 125 TTPSQTAQRFEKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 182

Query: 406 LFCNGEKD 429
             C+   D
Sbjct: 183 YICDHSVD 190


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 349  PLCQDGFLACGDSTCIERGLFCNGEKDC 432
            P+CQ G   C   +CI+ G  C+   DC
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDC 2118



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 349  PLCQDGFLACGDSTCIERGLFCNGEKDC 432
            P C  G   C D +CI + L C+ + DC
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDC 2271


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 376 CGDSTCIERGLFCNGEKDC 432
           C    CIE   FC+G+KDC
Sbjct: 703 CSSGECIEVATFCDGKKDC 721



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/49 (20%), Positives = 23/49 (46%)
 Frame = +1

Query: 283 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKD 429
           A+++ ++  ++    P++      C D    C +  C+ +   CNG +D
Sbjct: 635 AIRDIQITTEDCLCTPVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRD 683


>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
          Length = 262

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 295 CKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDC 432
           C+ +N E  +     T    C  G   CG+  CI     C+ + DC
Sbjct: 168 CRCQNGEVLVNGQCKTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDC 213


>SB_34641| Best HMM Match : Mucin (HMM E-Value=4.3)
          Length = 199

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 87  RRQRKMKAWNKNYARTRTPANGSGWW 164
           RR  K KAW    ART  P  G+ +W
Sbjct: 44  RRDTKHKAWTTRSARTWVPVTGTPYW 69


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 528  SSQERTHARNRMAELYLGRCQYHKEFSSDPSPTVLFAVTEKTAFNASRVAASEEAILTEW 349
            ++QE T A+N+MA +    CQ  +E ++     V   V          VA   ++++  W
Sbjct: 1273 TTQETTLAQNKMAVVATCVCQARQELNAHAPGRVCCPVITSRVLKVGYVARVGQSVVVNW 1332

Query: 348  F 346
            F
Sbjct: 1333 F 1333


>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
          Length = 130

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 352 LCQDGFLACGDST-CIERGLFCNGEKDC 432
           +C+D    CG S  CI +   C+G+ DC
Sbjct: 42  VCRDDQFQCGTSRKCIRKSKICDGKSDC 69



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 259 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGD-STCIERGLFCNGEKDC 432
           K  C   +  KNC          PL    +P C+     C + S C++R   C+G +DC
Sbjct: 66  KSDCSGGEDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDC 120


>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
          Length = 48

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
 Frame = +1

Query: 352 LCQDGFLACG-----DSTCIERGLFCNGEKDC 432
           LC  G+  CG     + +CI + L CNG  DC
Sbjct: 6   LCPSGYFYCGTGPKGEISCINKALRCNGIYDC 37


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 331 LLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDC 432
           LL+     C  G   C  S CI   L C+G +DC
Sbjct: 15  LLFRVVGCCDPGQFECTSSECIPDVLKCDGSEDC 48


>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
          Length = 1571

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 349 PLCQDGFLACG-DSTCIERGLFCNGEKDC 432
           P C +G   CG    C+ + L CNG+ DC
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDC 752



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
 Frame = +1

Query: 352  LCQDGFLACG-----DSTCIERGLFCNGEKDC 432
            LC  G+  CG     + +CI + L CNG  DC
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDC 1560


>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 628

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
           C  G  +C +  CI R   C+ + DC
Sbjct: 50  CNSGQFSCSNGRCISRSWVCDRDNDC 75


>SB_45816| Best HMM Match : Exo_endo_phos (HMM E-Value=0.004)
          Length = 377

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = +1

Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
           T P +   R+ KQ C W+D     K+      IKP  + +   C     +  + T +   
Sbjct: 22  TTPSQTAQRFAKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 79

Query: 406 LFCNGEKD 429
             C+   D
Sbjct: 80  YICDHSVD 87


>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
          Length = 1311

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 214 NTSY---TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKP 330
           NTS+   T P +   R+ KQ C W+D     K+      IKP
Sbjct: 64  NTSHIPLTTPSQTAQRFAKQQCIWRDTNNLIKINRVPGDIKP 105


>SB_23397| Best HMM Match : DSL (HMM E-Value=0.00011)
          Length = 331

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 202 YCLGNTSYTLPGRFVLRYE--KQTC--DWKDAVKNCKLKNKE 315
           YC+   S  L G +V  Y   ++ C   W DAV NC  K KE
Sbjct: 253 YCVSRDS-DLEGHYVCDYVQGRKVCREGWYDAVSNCTKKKKE 293


>SB_14554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = +1

Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
           T P +   R+ KQ C W+D     K+      IKP  + +   C     +  + T +   
Sbjct: 129 TTPSQTAQRFAKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 186

Query: 406 LFCNGEKD 429
             C+   D
Sbjct: 187 YICDHSVD 194


>SB_3501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = +1

Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
           T P +   R+ KQ C W+D     K+      IKP  + +   C     +  + T +   
Sbjct: 71  TTPSQTAQRFAKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 128

Query: 406 LFCNGEKD 429
             C+   D
Sbjct: 129 YICDHSVD 136


>SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/68 (23%), Positives = 27/68 (39%)
 Frame = +1

Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
           T P +   R+ KQ C W+D     K+ +    IKP  + +   C     +  + T +   
Sbjct: 191 TTPSQTAQRFVKQQCIWRDTNNLIKINSVPGNIKP--HKQMVFCHINARSVRNKTTVIND 248

Query: 406 LFCNGEKD 429
             C+   D
Sbjct: 249 YICDHSVD 256


>SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)
          Length = 919

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = +1

Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
           T P +   R+ KQ C W+D     K+      IKP  + +   C     +  + T +   
Sbjct: 252 TTPSQTAQRFAKQQCIWRDTNNLIKINRAPGDIKP--HKQMVFCHINARSVRNKTTVIND 309

Query: 406 LFCNGEKD 429
             C+   D
Sbjct: 310 YICDHSVD 317


>SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 214 NTSY---TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKP 330
           NTS+   T P +   R+ KQ C W+D     K+      IKP
Sbjct: 153 NTSHIPLTTPSQTAQRFAKQQCIWRDTNNLIKINRVPGDIKP 194


>SB_24702| Best HMM Match : C1_4 (HMM E-Value=0.98)
          Length = 221

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = +1

Query: 244 VLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNG 420
           V  + ++  D   A KNC+ KNK  K            ++G   C    C+    F NG
Sbjct: 145 VEHFSEKLADKAKACKNCQSKNKRLKAGNKAVQRAKETRNGCRKCDVHLCVGETAFVNG 203


>SB_22215| Best HMM Match : Rib_hydrolayse (HMM E-Value=0.035)
          Length = 186

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 534 SRSSQERTHARNRMAELYLGRCQYHKEFSSD 442
           S S    T       ++ LGRC Y+KEF  D
Sbjct: 22  SSSGTSNTGTTRNFKDIVLGRCYYYKEFMLD 52


>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 376 CGDSTCIERGLFCNGEKDC 432
           CG+STCI   + C+G  DC
Sbjct: 72  CGNSTCIPLTVLCDGLYDC 90


>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
          Length = 1012

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 468 DNDPNRAPPCDSSHVSFPDCF 530
           D+D ++ PPCDS H     C+
Sbjct: 124 DSDRDQTPPCDSDHDQTSPCY 144



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 468 DNDPNRAPPCDSSHVSFPDCFCFQDGT 548
           D+D ++ PPCDS H     C    D T
Sbjct: 317 DSDRDQTPPCDSDHDQTSPCDSDHDQT 343


>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
          Length = 932

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 472 TTQIELRHAIPRMCPFLTASASRTA 546
           TT+ E+  ++PR+   LT +ASRTA
Sbjct: 398 TTKKEISKSVPRLAANLTVAASRTA 422


>SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)
          Length = 809

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 540 PGSRSSQERTHARNRMAELYLGRCQYHKEFSSDPSPTVLFAVTEKTAFNASRV 382
           PG   SQ    + +R     L R QY KE +S  + +    +T +T   ASRV
Sbjct: 753 PGHHRSQAFAESFHRWLAQRLFRAQYSKELASGKTNSQC-CITRRTLSTASRV 804


>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
          Length = 983

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 540  PGSRSSQERTHARNRMAELYLGRCQYHKEFSSDPSPTVLFAVTEKTAFNASRV 382
            PG   SQ    + +R     L R QY KE +S  + +    +T +T   ASRV
Sbjct: 927  PGHHRSQAFAESFHRWLAQRLFRAQYSKELASGKTNSQC-CITRRTLSTASRV 978


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,359,112
Number of Sequences: 59808
Number of extensions: 400657
Number of successful extensions: 1773
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1771
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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