Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0062
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 3e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 3e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 184 3e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 184 3e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 3e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 5e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 3e-18
SB_54| Best HMM Match : Actin (HMM E-Value=0) 70 1e-12
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 60 8e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 59 2e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 55 4e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 5e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.034
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.059
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 33 0.18
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.42
SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17) 27 9.0
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 27 9.0
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 9.0
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 27 9.0
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 184 bits (449), Expect = 3e-47
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +3
Query: 252 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 431
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 432 ASLNPKANREKMTQIMFETFNTPAM 506
A LNPKANREKMTQIMFETFN+PAM
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAM 133
Score = 103 bits (247), Expect = 9e-23
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +1
Query: 109 MCDEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRR 261
M D+EIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 184 bits (449), Expect = 3e-47
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +3
Query: 252 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 431
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 432 ASLNPKANREKMTQIMFETFNTPAM 506
A LNPKANREKMTQIMFETFN+PAM
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAM 132
Score = 99 bits (238), Expect = 1e-21
Identities = 43/49 (87%), Positives = 49/49 (100%)
Frame = +1
Query: 115 DEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRR 261
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 184 bits (449), Expect = 3e-47
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +3
Query: 252 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 431
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 432 ASLNPKANREKMTQIMFETFNTPAM 506
A LNPKANREKMTQIMFETFN+PAM
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAM 132
Score = 101 bits (241), Expect = 5e-22
Identities = 44/49 (89%), Positives = 49/49 (100%)
Frame = +1
Query: 115 DEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRR 261
++E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 184 bits (449), Expect = 3e-47
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +3
Query: 252 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 431
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 432 ASLNPKANREKMTQIMFETFNTPAM 506
A LNPKANREKMTQIMFETFN+PAM
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAM 133
Score = 107 bits (256), Expect = 7e-24
Identities = 46/51 (90%), Positives = 51/51 (100%)
Frame = +1
Query: 109 MCDEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRR 261
MCD+++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 184 bits (449), Expect = 3e-47
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +3
Query: 252 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 431
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 432 ASLNPKANREKMTQIMFETFNTPAM 506
A LNPKANREKMTQIMFETFN+PAM
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAM 133
Score = 103 bits (247), Expect = 9e-23
Identities = 45/51 (88%), Positives = 50/51 (98%)
Frame = +1
Query: 109 MCDEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRR 261
M D++IAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 101 bits (241), Expect = 5e-22
Identities = 43/49 (87%), Positives = 49/49 (100%)
Frame = +1
Query: 115 DEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRR 261
D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 89.4 bits (212), Expect = 1e-18
Identities = 40/43 (93%), Positives = 40/43 (93%)
Frame = +3
Query: 252 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 380
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 453 NREKMTQIMFETFNTPAM 506
N + M +IMFETFN+PAM
Sbjct: 78 NWDDMEKIMFETFNSPAM 95
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 88.2 bits (209), Expect = 3e-18
Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +3
Query: 258 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEA 434
KD VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEP 112
Query: 435 SLNPKANREKMTQIMFETF 491
LNP NREKM ++MFE +
Sbjct: 113 PLNPMKNREKMIEVMFENY 131
Score = 44.4 bits (100), Expect = 6e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 127 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 225
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +3
Query: 360 KIWHHTFYNELRVAPEEHPVLLTEASLNPKANREKMTQIMFETFNTPAM 506
K+W H F ++LRV E+ PVLLTEA LNPK NRE+M Q+MFE+FN P M
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCM 2177
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 234
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 60.5 bits (140), Expect = 8e-10
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = +3
Query: 318 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANREKMTQIMFETFNT 497
PI+ G++ +WD EKI + + ++ HP+L++EA+ N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 498 PA 503
PA
Sbjct: 63 PA 64
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 234
LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +3
Query: 261 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASL 440
D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL +L
Sbjct: 283 DFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLLAVLAL 341
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +3
Query: 408 EHPVLLTEASLNPKANREKMTQIMFETFNTPAM 506
+HPVLLTEA LNP+ NREK ++ FETFN PA+
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPAL 158
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 5e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 103 FKMCDEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 249
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -2
Query: 231 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 115
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 35.1 bits (77), Expect = 0.034
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +3
Query: 243 GRYGQKDS---YVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 404
GR G+ DS VG++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 405 EEHPVLLTEASLNPKANRE 461
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 267 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 389
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 121 EIAALVVDNGSGMCKAGFAGDDAPRAV 201
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 206 GNTARGASSPAKPALHIPEPLSTTNAAI 123
GNT R PAKPAL++P P S T +++
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKTPSSV 107
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 206 GNTARGASSPAKPALHIPEPLSTTNAAI 123
GNT R PAKPAL++P P S T +++
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKTPSSV 107
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 31.5 bits (68), Expect = 0.42
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 206 GNTARGASSPAKPALHIPEPLSTTNAAI 123
GNT R PAKP+L++P P S T +++
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKTPSSV 567
>SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 111 HLELVKLVRCRCDKMK-IKRPAVTCYP*EPDTDCGPVP 1
HL LVKL R + + K IK+ CY +TD GP P
Sbjct: 356 HLTLVKLSRMKLKRKKVIKKIPEECYQPWMETDFGPEP 393
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 206 GNTARGASSPAKPALHIPEPLSTTNAAI 123
GNT R AKPAL++P P S T +++
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKTPSSV 67
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 206 GNTARGASSPAKPALHIPEPLSTTNAAI 123
GNT R PAKP L IP P + T +++
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKTPSSV 95
>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
Length = 905
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 78 CDKMKIKRPAVTCYP*EPDTDCGPVP 1
CD + I RP T P P+ C P P
Sbjct: 93 CDHLLIDRPPCTDLPSLPEFKCNPTP 118
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = -1
Query: 412 CSSGATRSSL*KV*CQIFSMSSQLVTIPCSMGYLRVRIPLLLCASS--PT*ESFCPYRPS 239
CS + + C + ++V CS + V + ++C+ P PS
Sbjct: 88 CSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPS 147
Query: 238 RPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 146
R D FP + R HH+L + + R+H
Sbjct: 148 RADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 127 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 231
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +3
Query: 330 GIVTNWDDMEKIWHHT---FYNELR---VAPEEHPVLLTEASLNPKAN 455
G+V + + + K+WHHT ++ V EH LL + S+ P+ N
Sbjct: 426 GVVEHTEPLLKVWHHTQEVCVGHIQGGGVGVVEHTELLLKVSIVPRTN 473
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,677,761
Number of Sequences: 59808
Number of extensions: 460430
Number of successful extensions: 1197
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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