Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0049
(517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 99 2e-21
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.020
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) 33 0.18
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 32 0.32
SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35) 32 0.32
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.43
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 31 0.43
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 1.3
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 30 1.3
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) 29 1.7
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 29 3.0
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) 29 3.0
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 4.0
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 28 4.0
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 28 5.3
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 5.3
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 28 5.3
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_4707| Best HMM Match : Toxin_17 (HMM E-Value=8.2) 27 6.9
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_53645| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3) 27 9.2
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 27 9.2
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 27 9.2
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 27 9.2
SB_6454| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 98.7 bits (235), Expect = 2e-21
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Frame = +3
Query: 72 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD--GIEKF 245
PS +D+ + A D +++++ F+ S L+ V+T EK LPSA + E + L D + F
Sbjct: 627 PSQEDIKEEAVDSRAEVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASF 686
Query: 246 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 425
D+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +T EKNPLP I
Sbjct: 687 DASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQTEEKNPLPDAKTI 744
Query: 426 EQEKS 440
QEK+
Sbjct: 745 AQEKA 749
Score = 92.7 bits (220), Expect = 2e-19
Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Frame = +3
Query: 111 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNP 290
+++++ F S L+ V+T EK LP+ + +A EK + + F G+E F ++LKH ET EKNP
Sbjct: 451 RAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNP 509
Query: 291 LPDKDAIEAE--KEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 434
LPD I AE E + + FD +KLKH ET EK +PTKDVIE E
Sbjct: 510 LPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 84.6 bits (200), Expect = 4e-17
Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Frame = +3
Query: 114 SQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKN 287
S +E F + L+ V+T EK LP A+++ E + L D E KFD+S+LKH ET+EK
Sbjct: 489 SGVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKV 548
Query: 288 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 434
+P KD IEAE ++ +++FD +KLKH T EKNPLPT + +E
Sbjct: 549 VMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNPLPTPQTLHEE 595
Score = 82.2 bits (194), Expect = 2e-16
Identities = 46/118 (38%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Frame = +3
Query: 87 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKH 266
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E ++ FD S+LKH
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKH 577
Query: 267 TETQEKNPLPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 434
TQEKNPLP + E KNK + + +FD TKLKH T EK+ +P+++ I++E
Sbjct: 578 VVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
Score = 72.9 bits (171), Expect = 1e-13
Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Frame = +3
Query: 156 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 335
DT ++I P +E + K + KFD++ LKH +T+EKN LP + I+ E + ++
Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDE 447
Query: 336 FLN--GIENFDPTKLKHTETCEKNPLPTKDVIEQEK 437
F + +++F+ +KL+H ET EKN LPTKD I EK
Sbjct: 448 FPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK 483
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 75 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 230
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
Length = 900
Score = 32.7 bits (71), Expect = 0.18
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 150 DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 326
DV + P+ A EKT K + DG +EK+ + +T + L D D E+E
Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDD---VEEE 397
Query: 327 KNKFLNGIENFDPTKLK 377
+ L+ + F TK K
Sbjct: 398 DDDVLDEADRFRDTKRK 414
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +3
Query: 78 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQ 257
L DL +V +LKS+ EG CL D++ + DV E I + + +
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSISEGELLK 1183
Query: 258 LKHTETQEKNPLPDK 302
K+T EK K
Sbjct: 1184 FKNTLQSEKEEFEKK 1198
>SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 31.9 bits (69), Expect = 0.32
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Frame = +3
Query: 183 SAEDVATEKTQ--KSLF--DGIE-KFDSSQLKHTETQEKNPLPDKDAIEAEK-----EKN 332
S+E+VA KT+ +SL D ++ K+ SSQ+ ET++ K ++E+ EK
Sbjct: 142 SSEEVAKWKTKLRRSLSKTDALDGKYSSSQIDKLETKQAIKSKKKKRRKSEEKELLGEKV 201
Query: 333 KFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 437
N +N + TK +H++ EKN Q+K
Sbjct: 202 DQFNSKKNLNRTKERHSKKMEKNRQDNSKTRSQQK 236
>SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35)
Length = 430
Score = 31.9 bits (69), Expect = 0.32
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Frame = +3
Query: 57 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDT----NEKIVLPSAEDVATEKTQ-KS 221
SV D P + + ++ T +K +LE ++ D++T ++ LP+A V T+K+ K
Sbjct: 218 SVKDHPVIARIVQLRTLIK-ELEPTDSRLEEDIETLLAMHKNGELPNASMVQTKKSNLKV 276
Query: 222 LFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 335
+ + S + KHT+ ++ +PL + ++ +K K K
Sbjct: 277 KLNMRHQAKSKKRKHTDKEDIDPLAYYEEVKMKKMKAK 314
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 5 ESSIPFVIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 139
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 31.5 bits (68), Expect = 0.43
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +3
Query: 243 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 422
+D Q K E PD+D +E E+E NG+E+ D K + PT DV
Sbjct: 839 YDVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDV 895
Query: 423 IEQE 434
Q+
Sbjct: 896 ETQQ 899
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 57 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 203
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 177 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP 296
L S D EKT D +E+F S +H T +KNPLP
Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228
>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
Length = 1558
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Frame = +3
Query: 144 LRDVDTNEKIVLPSAEDV------ATEKTQKSLFDGIEKFDS---SQLKHTETQEKNPLP 296
++D+ T E+++ AED A E ++++F+ EK +S + + TE Q+K
Sbjct: 1137 MKDLTTEEELIASYAEDAERAAEAAKEYRERTMFEIAEKINSIKEQRRQQTEAQKKKMDE 1196
Query: 297 DKDAIEAEKEKNK 335
+ +EAE E+ +
Sbjct: 1197 EIRRLEAELEEER 1209
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 261 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 398
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 281 EEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEP 403
EEP+ + +G KE+ E RE R H + V++EP
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 227 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS 364
RR +E+ AE H+ EPA + R+ SGE E+ H E++S
Sbjct: 35 RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 76
>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
Length = 1293
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 227 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS 364
RR +E+ AE H+ EPA + R+ SGE E+ H E++S
Sbjct: 11 RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 52
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.3 bits (60), Expect = 4.0
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = +3
Query: 75 SLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSS 254
SL D ++ S+L S LR +D+N + + S D E +K L +
Sbjct: 1409 SLSDKRPAPMNITSRLS--KISPLRALDSNAECAVSSDSDSELEDEKKPLASFCSQVKMH 1466
Query: 255 QLKHTETQEKNPLPDKDAIEAEKEKNKF-LNGIENFDPTKLKHTETCEKN 401
+ K + + LP++ A + KN+ + N L+ ++T EK+
Sbjct: 1467 KTKEQQCNVEKTLPEESAQKRTFVKNRTDMASSLNIRRRHLEDSKTLEKS 1516
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 216 KSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHT--ET 389
KS+F + + + TET+E NP D +AE+ + G + T+ K T ET
Sbjct: 276 KSVFKRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTNMET 335
Query: 390 CEKNPL 407
K L
Sbjct: 336 LRKEML 341
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Frame = +3
Query: 198 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDAIEAEKEKNKFLN 344
A T L DG+ D ++ +H + T E++P DK + L+
Sbjct: 226 ALRDTTHDLLDGLRYSDQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYKALRDTTHDLLD 285
Query: 345 GIENFDPTKLKHTETCEKNPLPTKDVIEQE 434
G+ +FD K +H + K IEQ+
Sbjct: 286 GLRDFDQAKEEHAKLIPKYHKIMIKTIEQD 315
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 186 AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEK 323
++D EKT+ S+ + + DSS T+EK +KD E+
Sbjct: 1546 SDDGTDEKTEDSMQEDAKDLDSSNTASDTTKEKGKNKEKDKTVLER 1591
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 248 FEPAEAHRDSGEEPASGQRRYRSGEG 325
FEP E H DSG+E Y EG
Sbjct: 266 FEPMEIHDDSGDEDVDSDDDYDDREG 291
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 204 EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 329
E+ Q+ E+ + + KH E +EK +K+ +E EK+K
Sbjct: 336 ERIQQEKEKQKERREKEKQKHQEKKEKERQREKEKLEKEKQK 377
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +3
Query: 183 SAEDVATEKTQKSLFDGIEKFDSSQL-KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENF 359
S E+ + E++++ +G + S+++ K +ET+ K P DKD E + ++ + E+
Sbjct: 690 SEEEESEEESEEDEEEGAKPSASAKIAKTSETENKVPKVDKDDEEDDDDEEEESEEDESN 749
Query: 360 DPTKLKHTETCEKNPLPTKDVIEQEK 437
P+ + T E K E+E+
Sbjct: 750 KPSSRQVTAKKEDKKGKKKKKEEEEE 775
>SB_4707| Best HMM Match : Toxin_17 (HMM E-Value=8.2)
Length = 121
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 357 SSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGS 250
SSRC + FP+ R + AGS +RC S GS
Sbjct: 22 SSRCDKNLLRFPAWYR--ISENAGSIVTNRCVSRGS 55
>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +3
Query: 210 TQKSLFDGIEKFDSSQLKHTET---QEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKL-K 377
T L+ E+FD + H E +EKN + A E+ KNK + E F L K
Sbjct: 480 TLACLYVDTEQFDKADTMHREVLHIKEKNNTITRGAAYREQVKNKLVKLAEEFYNKALEK 539
Query: 378 HTE 386
H E
Sbjct: 540 HHE 542
>SB_53645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 153 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKF-DSSQLKHTET-QEKNP 290
VD +E +++ S+ D + EK S +EK+ S Q K T++ QEK P
Sbjct: 53 VDDHEVVIVVSSHDSSEEKRHLSTRYNLEKWPGSDQEKWTDSFQEKIP 100
>SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3)
Length = 866
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 228 DGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 335
D +E FD++ L HT+ N +++ +E +K++
Sbjct: 73 DNLEGFDNADLDHTDQSGINVKSEQEFVEVHLQKSR 108
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/88 (22%), Positives = 33/88 (37%)
Frame = -2
Query: 408 GAGSFRTSPCASA*WDRSSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGSNQTSRYR 229
G GS +T C + R + +C R+C G+ C S G+++T R
Sbjct: 426 GEGSDKTGKC-----EDEGRDETRMCKGKGRDETRMCKGEGTDETRMCKSEGTDET---R 477
Query: 228 RIKTSGSSQWQRLQQTEAQSFHWCRRHG 145
K GS + + + C+ G
Sbjct: 478 MCKDEGSDETRMCKDEGTDETRMCKGEG 505
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 27.1 bits (57), Expect = 9.2
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Frame = +3
Query: 189 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPT 368
ED Q + + + + TE L +D EAE FLN IE +
Sbjct: 876 EDKECNTDQTGYIESVSFVEKGDFEVTEKDCMTDLAWRDIEEAEANYKGFLNNIEEMEEK 935
Query: 369 KLK-HTETCEKNPLPTKDVIEQEKSX*TTTL*QXLAN 476
K E C + T+ + +S T T + AN
Sbjct: 936 LAKLSLEKCNEQGTMTESSWKDVESESTKTHDKQKAN 972
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 27.1 bits (57), Expect = 9.2
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Frame = +3
Query: 69 TPSLKDLPKVA-TDLKSQLEGFNTS-CLRDVDTNEKIVLPSA---EDVATEKTQKSLFDG 233
TPS K P A T T+ LR + EK L + E E QK +
Sbjct: 295 TPSSKTTPADAETKTSPSTTSPQTNKALRQKEEKEKQRLEAKAAKEKERLEAKQKKEQER 354
Query: 234 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 335
+EK + K E EK +KD +E +++K +
Sbjct: 355 LEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEE 388
>SB_6454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 174 VLPSAEDVATEKTQKSLFDGIEKFDSSQ 257
++ A ++ATE+T K + G+E+ D Q
Sbjct: 35 IVAGAAEIATEQTNKIIDKGLERVDEQQ 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,341
Number of Sequences: 59808
Number of extensions: 311177
Number of successful extensions: 1238
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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