Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0043
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)                    28   6.5  
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                       28   8.6  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)                 28   8.6  
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)                 28   8.6  

>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 286 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 414
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 190 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GP 59
           S +  +S S  SSVC  ++H+LS+ R   +C S     A+   P
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473


>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
          Length = 1123

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +2

Query: 482  RRYHDYIGE-YCNLVWCYYSNFNLYLFDK----FCLVVVTYSIENQNLIFFCVRHSFVY 643
            R YH +    +   VW  +SN   YL D+    FC+ + ++ ++    +     HS  Y
Sbjct: 996  RDYHQHSSSVFATRVWVIWSNLYFYLVDRDFNIFCVHMKSFKLDAWQFVVASYNHSAGY 1054


>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +1

Query: 226 LMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACL------ANKGNSPHQ 354
           L +KD K +  V  A    AEDKL+VE LI A +      +++GNS +Q
Sbjct: 428 LASKDSKKQLLVGAAIGTRAEDKLRVEALIHAGVDVIILDSSQGNSAYQ 476


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -2

Query: 405 SVLRVFLVVAFHIIPGCLVRAVAFVGQASVNQLLYFQFVFSIRHFSQSDVLLEFPVLGHQ 226
           SVL VF+V+   +IPG  V A  +V     N  + +++VF+     Q  ++L F +L  +
Sbjct: 26  SVLLVFMVLLIVMIPGTWVAAAIYVKHFQDN--VIWEYVFAGSCALQGILVLLFGLLDRE 83

Query: 225 L 223
           +
Sbjct: 84  I 84


>SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)
          Length = 235

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = +1

Query: 37  VVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLK--TGDFKTE--NEPLKKYAL 204
           V  V+      +E +EN+    AD  S +  DE +VNK    T     +  N+P      
Sbjct: 28  VTGVISLYLFREELRENVADEVADVASRSLGDENVVNKANEVTKQVLQDIINDPETTRLA 87

Query: 205 CMLIKSQLMTKD-GKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSP 348
              + S L   D  K   ++ L  + N E + KV K+    L +  N P
Sbjct: 88  SNFVMSVLGQDDVRKSAVELTLFVLQNRETQAKVSKVAAQTLKDLINHP 136


>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
          Length = 367

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 138 LFISFRLG--ETVGSVFLQVLLLLICEGLSQDNADDEHDK 25
           LF++F  G  E VG  F+     L CE    D  DD+H++
Sbjct: 305 LFLAFNRGYRELVGRAFIYTCCTL-CEIAEDDENDDDHER 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,067,595
Number of Sequences: 59808
Number of extensions: 432987
Number of successful extensions: 1231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)