Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0033
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 30 2.0
SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5) 29 2.6
SB_43762| Best HMM Match : Pentaxin (HMM E-Value=1.4e-13) 29 3.5
SB_41641| Best HMM Match : PT (HMM E-Value=3.1) 29 3.5
SB_52068| Best HMM Match : FG-GAP (HMM E-Value=0.03) 29 4.6
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 29 4.6
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_16723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_26232| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0) 28 8.0
>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 533 SRHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQ 423
S +QD+RH + QD++ QDI H G +QD++
Sbjct: 69 SVNQDIRHACSVNQDIRHACSVNQDIRHPGSVNQDIR 105
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 533 SRHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQRRGV--RDWRRKICLEEE 375
S +QD+RH + QD+ QDI H G +Q+++ G +D R + + ++
Sbjct: 189 SVNQDIRHAISVNQDIHHPCSVNQDIRHPGSVNQNIRHPGSVNQDIRHAVSINQD 243
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 533 SRHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQ 423
S +QD+RH + QD++ QDI H F +Q+++
Sbjct: 79 SVNQDIRHACSVNQDIRHPGSVNQDIRHAVFVNQEIR 115
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 533 SRHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQRRG 414
S +QD+ H + QD++ QDIHH +QD++ G
Sbjct: 179 SVNQDIHHACSVNQDIRHAISVNQDIHHPCSVNQDIRHPG 218
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 533 SRHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQRRGV--RDWRRKICLEEE 375
S +QD+RH + QD++ QDI H +QD++ G +D R + + +E
Sbjct: 59 SVNQDIRHAISVNQDIRHACSVNQDIRHACSVNQDIRHPGSVNQDIRHAVFVNQE 113
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 533 SRHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQ 423
S ++D+RH + QD++ QDIHH +QD++
Sbjct: 159 SVNKDIRHAYSVNQDIRHAVSVNQDIHHACSVNQDIR 195
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 533 SRHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQ 423
S +QD+RH + QD++ QDI H +QD++
Sbjct: 49 SVNQDIRHPSSVNQDIRHAISVNQDIRHACSVNQDIR 85
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 533 SRHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQ 423
S +Q++RH + QD++ QDI H G +QD++
Sbjct: 219 SVNQNIRHPGSVNQDIRHAVSINQDICHAGSVNQDIR 255
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +1
Query: 304 VSCCGCCPYTARCETDCCACYTGC 375
V+CC C C CC+C C
Sbjct: 148 VACCSCRVVCYSCRVACCSCRVAC 171
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +1
Query: 304 VSCCGCCPYTARCETDCCACYTGC 375
V+CC C C CC+C C
Sbjct: 232 VACCSCRVVCYSCRVACCSCRVVC 255
>SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)
Length = 425
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = -3
Query: 679 SVLYKNITLVVSS----IGM*RCIMTVISSPKISTAKMSTTKMSANK-MSATKIAATKMS 515
S + KNI+ V I M RCI+T SPK +A + K S+N+ ++++K A +S
Sbjct: 195 STIGKNISSPVKKPPGFISMYRCILTPPGSPKRLSAVLVARKRSSNRTVASSKQARQHIS 254
Query: 514 ATKMP 500
+ P
Sbjct: 255 SHSSP 259
>SB_43762| Best HMM Match : Pentaxin (HMM E-Value=1.4e-13)
Length = 207
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 67 GRDSFNGVCGSLSGARVWRTWMVGTRIAGTRTAG*ALWT 183
G D+ GSLSG +W+T ++G + +AG +W+
Sbjct: 141 GYDAKQSFVGSLSGVNIWQT-VLGDDVIQAMSAGCNMWS 178
>SB_41641| Best HMM Match : PT (HMM E-Value=3.1)
Length = 873
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 245 EPREQHAPMEQPGVAIASERDVQRA*-PAVRVPAIRVPTIHVRHTRAPDKEPQTPLNESR 69
+P Q P ++P V + +R P + P + V + P K PQ P+ E++
Sbjct: 667 DPNGQAEPTKRPQVPVGEAEPTKRPQSPVGEAEPTKRPQVPVGEAK-PTKRPQVPVGEAK 725
Query: 68 P 66
P
Sbjct: 726 P 726
>SB_52068| Best HMM Match : FG-GAP (HMM E-Value=0.03)
Length = 103
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 73 DSFNGVCGSLSGARVWRTWMVGTRIAGTRTA 165
DS N C LSG VW + G+ AG R A
Sbjct: 56 DSGNVACTDLSGKMVWEGRVSGSAAAGIRVA 86
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +1
Query: 298 PYVSCCG----CCPYTARCETDCCACYTG 372
P CC CCPY +C+T AC G
Sbjct: 59 PNAVCCSDLRHCCPYGYKCDTSGGACIRG 87
>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2371
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 75 FIQRRLWLLIRCTGMADMDGWDTDRWDTDCRLSPLDITF*SDRHTW 212
++Q L ++R TG+A D D+W + RLS + +D +TW
Sbjct: 223 YLQVDLGRVVRVTGIATQGSPDEDKWASQYRLS-----YSNDSNTW 263
>SB_16723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 114 GMADMDGWDTDRWDTDCRLS 173
G+ D GW D +DTDC S
Sbjct: 2 GIPDPYGWSVDLYDTDCHFS 21
>SB_26232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 533 SRHQDVRHQDARRQDVQLQNIHRQDIHHQGFQ 438
+RH+DVR ARR N H H+ G Q
Sbjct: 9 NRHEDVRRNSARRSCASPGNRHEDVRHNSGRQ 40
>SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1236
Score = 27.9 bits (59), Expect = 8.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 319 CCPYTARCETDCCACY 366
CCP CE++CC Y
Sbjct: 489 CCPSFCYCESNCCTSY 504
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,802,040
Number of Sequences: 59808
Number of extensions: 253213
Number of successful extensions: 931
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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