Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0026
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)           29   4.7  
SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)                 28   6.2  
SB_40942| Best HMM Match : 7tm_1 (HMM E-Value=1.4013e-45)              28   8.3  
SB_5785| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 407 KNRIHKTLAHDAMMQLHIVDSKDGSSPFLMQMLWGKLISVVV 532
           K R+H T A + +MQ   V  ++  SPFL   + GK++SV V
Sbjct: 457 KVRVH-TKAEEELMQYMPVKDEEDMSPFLKSPMPGKVVSVAV 497


>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
          Length = 686

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 25/102 (24%), Positives = 39/102 (38%)
 Frame = +2

Query: 293 KGTIVRQRYHTEHPFDVWSKSTAGIKGCFQQVLSLDLDKNRIHKTLAHDAMMQLHIVDSK 472
           KGTIVR + HT      WS     +KG    V  L      I K   +   ++  +  +K
Sbjct: 86  KGTIVRIKEHTATTRGSWSMEVTSVKGDSVSVKVLSPATAPIGK---YQLYVETEVKGAK 142

Query: 473 DGSSPFLMQMLWGKLISVVVYRRNQGITEEQLKPIFELATKI 598
           DG       M  G    +V++     +    L PI+ +   +
Sbjct: 143 DGKKLIFRSMQAG---IIVLFNAWCKVLYMNLTPIYSICNTV 181


>SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)
          Length = 583

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 188 TCYKMEISETDEAGLR-WLINRTTHGPQNKSIIADVKGTIVRQRY 319
           TC+  +++      +R W+ ++T H P   S++ + +G + ++ Y
Sbjct: 497 TCHNRKVAYYSGESVREWVRSKTGHNPTVSSVVINWRGAMTKESY 541


>SB_40942| Best HMM Match : 7tm_1 (HMM E-Value=1.4013e-45)
          Length = 358

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 653 AKYLSRDYRRFSAIVGVLGFWSPIRRLVSTALR*FPDSFDKRQQISVS 510
           A YL   YR F+ I  ++ FW P+  ++S     F  +  + +QI+ S
Sbjct: 153 ASYLLWQYRIFNFISSIVYFWVPLLIIISAYSIVFRVALRQTRQINTS 200


>SB_5785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 650 KYLSRDYRRFSAIVGVLGFWSPIRRLVSTALR*FPDS 540
           ++L RD R F   V V+G +SP+ R    A+R F DS
Sbjct: 26  RHLDRDIRHF---VDVMGLFSPVARFFGCAIR-FLDS 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,162,715
Number of Sequences: 59808
Number of extensions: 458985
Number of successful extensions: 1057
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)