Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0023
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 99 4e-36
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 30 1.6
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 24 2.0
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 29 2.8
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 4.9
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 28 4.9
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 28 4.9
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.1
SB_20312| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) 25 9.4
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 98.7 bits (235), Expect(2) = 4e-36
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +3
Query: 33 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 212
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 70.5 bits (165), Expect(2) = 4e-36
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +3
Query: 312 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 491
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 492 VK 497
VK
Sbjct: 703 VK 704
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -3
Query: 544 NPINAELVYLSRAVF---ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSS 374
NP L Y + A+F + A S QD+ +H NS + N +P+ S I ++
Sbjct: 69 NPSFGPLNYATMAIFPPNTVPAPPQDSTQDYREIHTNSFYFQHQMSNTLPKEES-IQQAD 127
Query: 373 RRSPLSAIRV 344
+P + V
Sbjct: 128 ESAPHDILSV 137
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 24.2 bits (50), Expect(2) = 2.0
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 97 SPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMK 255
+PC ++ C + +S+ V ++K P P TL ++G + +K +K
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVK 450
Score = 23.8 bits (49), Expect(2) = 2.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 79 PGPQPPSPCNVRP 117
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 46 TSKTHTLRPETPGPQPPSPCNVRPCVKMVSLC*RVVH-ARLLKCPH 180
T+K HT +P T P P N+ P + +L ++H + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 10 LTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 120
L K KT + T+K +T +P T P+ P +PC
Sbjct: 96 LYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 123 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 242
+ G +M +G+PCKI + K G HG +H+ G D NG
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 237 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 365
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +3
Query: 264 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 443
P + + V + +++ D + ADN + RE+ + +L ++ T G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 444 LLCTVLKSCGEECVIAVKANTALD 515
T KS GEE V A ++ +LD
Sbjct: 344 SAATYGKSDGEENV-AQESEESLD 366
>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.7 bits (61), Expect = 3.7
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
Frame = +3
Query: 57 THFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT-----GKHGHAKVHLV 221
T E+G + P QC+ + F+ RP + + S ++ G + L
Sbjct: 865 TRRESGQRVSHGLSPKQCAVSVVSSFMDSGARPRRFLPGSQARPRRFLPGSQPRPRRFLP 924
Query: 222 GIDIFNGKKYE--DICPSTHNMDVPHVKREDYQLTDISD-DGYLTLMADNGDLREDLKIP 392
+ + G Y ++ P +D+ + Y++ ++ D YL L D GD LK+
Sbjct: 925 VLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYPVLKLD 984
Query: 393 DGDLGTQLRTD 425
GD L+ D
Sbjct: 985 PGDFYPVLKRD 995
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 472 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 341
P+ S V + +LP+ V C+P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -1
Query: 135 RNHFYAGPNIAW--GRWLRPRSLRSQSV 58
R F+ PN+A G+WL P+SLR+ V
Sbjct: 947 REGFFNNPNLAGCKGQWLGPKSLRASRV 974
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 13 TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 117
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 25.0 bits (52), Expect(2) = 6.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 49 SKTHTLRPETPGPQPPSPCNVRPCV 123
SK+H ++ T GP+ SP N R +
Sbjct: 4412 SKSHPMQARTQGPRTHSPYNGRKSI 4436
Score = 21.0 bits (42), Expect(2) = 6.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 169 KCPHPKPESTATLKFTWLGLISSMVKSMK 255
K P P ++ FTW ISS+ SM+
Sbjct: 4474 KNPGYGPAKELSIAFTWGFSISSLRSSMQ 4502
>SB_20312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 553 KFVNPINAELVY---LSRAVFALTAMTHSSPQDFSTVHNNSLPLSKSVRNC 410
KF++P +A + +R+ + T M+H SP + +T + KS R C
Sbjct: 23 KFIDPTSARISNQKAANRSQQSATQMSHKSPTNCTTCRMSDFSAGKSRREC 73
>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 279 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 446
+D+P+ K + + L ++DD L+ + D L E L PD + R D G E
Sbjct: 37 LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94
Query: 447 LCTVLKSCGEEC 482
LC L+ C
Sbjct: 95 LCMTLRRFAYPC 106
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 34 QQWVTSKTHTLRPETPGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKP 189
+Q V S P P P PP+PC + PC + +VVH+ L P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171
>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
Length = 605
Score = 25.0 bits (52), Expect(2) = 9.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 52 KTHTLRPETPGPQPPSP 102
K H +P P P PPSP
Sbjct: 344 KEHPDKPRDPAPVPPSP 360
Score = 20.6 bits (41), Expect(2) = 9.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +1
Query: 76 TPGPQPPSPCNVRP 117
T GP PP+ N +P
Sbjct: 377 TFGPPPPAASNAKP 390
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,363,720
Number of Sequences: 59808
Number of extensions: 447872
Number of successful extensions: 1465
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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