Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0015
         (461 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)              29   2.5  
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   3.3  
SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)                  27   7.6  
SB_41258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_32815| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-07)          27   10.0 

>SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)
          Length = 369

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 3   RREVATYRSRAQTCAVSTCAVLQTLCAVYYVYLCIIFMCILC 128
           R+E+ TY     T  +    ++  +C VY++ LC   +C++C
Sbjct: 311 RQEMGTYADTIWTFGLFFYGIIAIVCVVYWL-LCGKCICVMC 351


>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 21  YRSRAQTC-AVSTCAVLQTLCAVYYVYLCIIFMC 119
           Y S  +TC  +   + L T C +YY+ +C+   C
Sbjct: 488 YHSNIETCECILMRSYLSTKCGLYYIQMCVNAEC 521


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 18  TYRSRAQTCAVSTCAVLQTLCAVYYVYLCIIF--MCILCSL 134
           T R    TC    C  LQ    + +  LC  F  +C+LCS+
Sbjct: 229 TCRCSVCTCCPCDCTCLQCAPCIVFSALCCPFWSLCLLCSM 269


>SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 325 PNYTLPHKPCERNIFKCSLSG 387
           P Y +PHK   RNI +C ++G
Sbjct: 185 PIYAIPHKKRVRNIDECEIAG 205


>SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)
          Length = 129

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 30  RAQTCAVSTCAVLQTLCAVYYVYLCIIFMCILCSLR 137
           R   CAV  C  ++++C         + MC +C+ R
Sbjct: 89  RVVICAVCACRYVRSVCVSLCAQCLRVVMCAVCACR 124


>SB_41258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 9   EVATYRSRA-QTCAVSTCAVLQTLCAVYYVYLCIIFMCIL 125
           +V   ++R  Q C V  C V   +  V  V +C++ +C++
Sbjct: 106 QVCVVQARVVQVCVVPVCVVRVCVVQVRVVQVCVVQVCVV 145


>SB_32815| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-07)
          Length = 161

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 290 HNWKSCEVLREHQTIRCL 343
           H W+ C+VLR+H  + C+
Sbjct: 7   HVWRRCKVLRKHILLSCV 24


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,424,405
Number of Sequences: 59808
Number of extensions: 178076
Number of successful extensions: 562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)