Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0001
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)                 28   5.7  
SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)                      28   7.5  

>SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)
          Length = 544

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 298 EINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPIIIGITIK 158
           EI N+ + G   ++   ++G+ I+ AP+IRGT+       ++ +  K
Sbjct: 424 EIVNVTDDGGVDHVAGRVKGHVIAIAPAIRGTDHVIGAGAVVEVVAK 470


>SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)
          Length = 414

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 277 GGRSQNLILFIRGNAISGAPSI 212
           GG S+NLI F  G  I G PS+
Sbjct: 99  GGESKNLINFALGQDIGGVPSV 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,747,698
Number of Sequences: 59808
Number of extensions: 233462
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)