Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0040
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              31   1.2  
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                29   3.6  
SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)                 29   3.6  
SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31)                     28   8.4  

>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +3

Query: 24  YSRPRPTRRAPAMFDVFGSVKGLLKLDSVCXDNNVFRLHYKATXIILIAFSLLVTSRQYI 203
           ++ P PT R+P    +  S+ GL+ + +   +    R ++  T     A++L +  ++++
Sbjct: 648 HTPPPPTDRSPVYSHLSTSLTGLITIRAFQAEQAFIRSYHAYTDFHTGAYALNLGIQRWL 707

Query: 204 GDPIDCI-VDEIPLAVMDTYCWIYSTFTIPNRLIG 305
           G  +D I      LAV  +   + + FTI   ++G
Sbjct: 708 GIRLDIISALFFALAVFTSLLTVEAGFTISASVVG 742


>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = -3

Query: 350 DMWADAGLHVILSDAADKSVRDGESRVYPAVRVHN-GERD-FINDAVNRVTDVLSRRDEK 177
           D W  A       +  D  +  G      A R    GE D  IND  N++ +++S R+  
Sbjct: 494 DEWETASDVSSDEEPRDSIISYGSPEAETAQREQGTGENDDTINDERNKINEIISNRNPG 553

Query: 176 RERDQDNXGGFV 141
           +     N GG+V
Sbjct: 554 KRVQVTNHGGYV 565


>SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)
          Length = 155

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 443 VAGNIKQDCLKE*HKXNPLIIFVIXNFVLS 354
           V G +  +C+KE    +PL++FV  N  +S
Sbjct: 115 VEGKVHSECIKECRSTSPLLLFVTENATVS 144


>SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31)
          Length = 571

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +3

Query: 96  KLDSVCXDNNVFRLHYKATXIILIAFSLLVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYS 275
           KLDS C  NN+       T  ++ +   ++ S Q++ D    ++D     +  T   I S
Sbjct: 177 KLDSCC--NNLASFVINTTHFVINSNQFVIDSTQFVIDSTQFVIDSTQFVIDSTRFVINS 234

Query: 276 TFTIPN 293
           T  + N
Sbjct: 235 TRFVIN 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,395,412
Number of Sequences: 59808
Number of extensions: 336772
Number of successful extensions: 805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)