Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0039
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45) 260 1e-69
SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16) 149 3e-36
SB_10636| Best HMM Match : Band_7 (HMM E-Value=1.1e-05) 31 0.76
SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_30490| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_15638| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34) 31 1.00
SB_34214| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3) 31 1.00
SB_32642| Best HMM Match : IL10 (HMM E-Value=2.5) 31 1.00
SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3) 31 1.00
SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_2239| Best HMM Match : WXG100 (HMM E-Value=2.8) 31 1.00
SB_33677| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 28 9.3
>SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)
Length = 242
Score = 260 bits (636), Expect = 1e-69
Identities = 127/170 (74%), Positives = 138/170 (81%)
Frame = +1
Query: 25 MAAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPW 204
MAA FNR+ NSAL+NVDGGHRAVIFDRF GVK VVGEGTHF IPW
Sbjct: 1 MAASFFNRLAGLGLGVAVVGGVVNSALFNVDGGHRAVIFDRFQGVKPDVVGEGTHFLIPW 60
Query: 205 VQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFXPVPDQLPRIYTILGIDYDERVLP 384
VQRPIIFDIR+RPRNVP TGSKDLQNVNITLRIL+ P P LP+IY LG DYDERVLP
Sbjct: 61 VQRPIIFDIRTRPRNVPVTTGSKDLQNVNITLRILYRPQPQVLPKIYMNLGEDYDERVLP 120
Query: 385 SITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISI 534
SIT+EVLKAVVAQFDAGELITQRE+VSQKV + LTERA+ FGL+LDDIS+
Sbjct: 121 SITTEVLKAVVAQFDAGELITQREMVSQKVQEDLTERASSFGLVLDDISL 170
>SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)
Length = 500
Score = 149 bits (360), Expect = 3e-36
Identities = 76/127 (59%), Positives = 98/127 (77%), Gaps = 2/127 (1%)
Frame = +1
Query: 274 DLQNVNITLRILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQR 453
DLQ VNI LR+L P ++LP +Y LG+D+DERVLPSI +EVLK+VVAQF+A +LIT R
Sbjct: 357 DLQMVNIGLRVLARPEANKLPPMYRKLGLDFDERVLPSIMNEVLKSVVAQFNASQLITMR 416
Query: 454 EIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLXEKA 633
+ VS + L ERA F +ILDD+SIT L+FGKE+T A+E KQVAQQEA++A+F+ EKA
Sbjct: 417 QQVSLLIRRQLMERARDFYIILDDVSITDLSFGKEYTSAIEAKQVAQQEAQRAQFIVEKA 476
Query: 634 --EHQKK 648
E Q+K
Sbjct: 477 IQERQQK 483
>SB_10636| Best HMM Match : Band_7 (HMM E-Value=1.1e-05)
Length = 152
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/67 (23%), Positives = 38/67 (56%)
Frame = +1
Query: 436 ELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKAR 615
E+++QR+ +SQ + SL E +G+ ++ I + + ++ +A+ + A +EA +A+
Sbjct: 32 EILSQRDEISQTMQSSLDEATDPWGVKVERIEVKDVRLPQQLQRAMAAEAEATREA-RAK 90
Query: 616 FLXEKAE 636
+ + E
Sbjct: 91 IIAAEGE 97
>SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 574 ELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGDPXGCCTSRKV 705
ELKQV Q E+ L E K GD CC+S+K+
Sbjct: 173 ELKQVQQTNCEEIEVLEALNEELKAYALALEEGDEKLCCSSKKI 216
>SB_30490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 574 ELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGDPXGCCTSRKV 705
ELKQV Q E+ L E K GD CC+S+K+
Sbjct: 173 ELKQVQQTNCEEIEVLEALNEELKAYALALEEGDEKLCCSSKKI 216
>SB_15638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 574 ELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGDPXGCCTSRKV 705
ELKQV Q E+ L E K GD CC+S+K+
Sbjct: 173 ELKQVQQTNCEEIEVLEALNEELKAYALALEEGDEKLCCSSKKI 216
>SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
Length = 636
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 574 ELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGDPXGCCTSRKV 705
ELKQV Q E+ L E K GD CC+S+K+
Sbjct: 153 ELKQVQQTNCEEIEVLEALNEELKAYALALEEGDEKLCCSSKKI 196
>SB_34214| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
Length = 214
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 574 ELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGDPXGCCTSRKV 705
ELKQV Q E+ L E K GD CC+S+K+
Sbjct: 94 ELKQVQQTNCEEIEVLEALNEELKAYALALEEGDEKLCCSSKKI 137
>SB_32642| Best HMM Match : IL10 (HMM E-Value=2.5)
Length = 544
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 574 ELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGDPXGCCTSRKV 705
ELKQV Q E+ L E K GD CC+S+K+
Sbjct: 173 ELKQVQQTNCEEIEVLEALNEELKAYALALEEGDEKLCCSSKKI 216
>SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
Length = 711
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 574 ELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGDPXGCCTSRKV 705
ELKQV Q E+ L E K GD CC+S+K+
Sbjct: 173 ELKQVQQTNCEEIEVLEALNEELKAYALALEEGDEKLCCSSKKI 216
>SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 574 ELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGDPXGCCTSRKV 705
ELKQV Q E+ L E K GD CC+S+K+
Sbjct: 668 ELKQVQQTNCEEIEVLEALNEELKAYALALEEGDEKLCCSSKKI 711
>SB_2239| Best HMM Match : WXG100 (HMM E-Value=2.8)
Length = 139
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 574 ELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGDPXGCCTSRKV 705
ELKQV Q E+ L E K GD CC+S+K+
Sbjct: 94 ELKQVQQTNCEEIEVLEALNEELKAYALALEEGDEKLCCSSKKI 137
>SB_33677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 194 SFLGSRGQLYLTSGLDPEMFLLLLEV 271
S+ GS GQ Y+T GLD E+ +L +++
Sbjct: 366 SYFGSSGQQYVTLGLDEEVQILQVDL 391
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 424 FDAGELITQREIVSQKVNDSLTERAAQFGLILD--DISITHLTFGKEFTQAVELKQVAQQ 597
+D + QR+ + +ND L ++ +F D + +T G+E +A+ELK +QQ
Sbjct: 132 YDVPMVERQRQETKEMMNDFLKQKP-KFASARDLGNKLVTEPCLGREEREALELKMTSQQ 190
Query: 598 E 600
E
Sbjct: 191 E 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,898,166
Number of Sequences: 59808
Number of extensions: 348931
Number of successful extensions: 806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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