Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0020
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               29   3.3  
SB_45314| Best HMM Match : GRP (HMM E-Value=4.8)                       28   7.7  
SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5)                    28   7.7  

>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 454  PEPPANLNKVAYNTNIGXNAPANNYDESGEDDGQYXPPQGEDDG 585
            P P +++  V+     G   P N++   GED  +Y   +G+  G
Sbjct: 1018 PSPCSSIEDVSSPRMTGRKTPLNDFTSGGEDASEYSGKRGKKKG 1061


>SB_45314| Best HMM Match : GRP (HMM E-Value=4.8)
          Length = 123

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 454 PEPPANLNKVAYNTNIGXNAPANNYDESGEDDGQYXPPQGEDD 582
           P PP+   ++    N   N   +N D+ G+DD        +DD
Sbjct: 39  PHPPSPFRRLCNGNNNVENDDNDNDDDGGDDDDDKDDDPNDDD 81


>SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5)
          Length = 307

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 457 EPPANLNKVAYNTNIGXNAPANNYDESGEDDGQYXPPQGEDD 582
           E P NL K ++  N   ++  ++ D++GEDD        +DD
Sbjct: 62  EMPMNLRKTSFLKNDDNDSHDDDDDDAGEDDDNDGDDDDDDD 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,964
Number of Sequences: 59808
Number of extensions: 313528
Number of successful extensions: 877
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)