Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0004
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               30   1.7  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)                     28   9.3  

>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 282 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRS 395
           LL+ +LG D + ++I C++ S    SDTL  L Y  R+
Sbjct: 127 LLADSLGGDGVTLMIACISPSSSVVSDTLNTLRYANRA 164


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +1

Query: 58   RSTNEALARRGRHGTTVAYIVDDSGSDHKFPTTT 159
            RST  ALA RG H   V     D G   KFPT+T
Sbjct: 1594 RSTGPALASRGTHSAPVFPTNSDQGR-FKFPTST 1626


>SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)
          Length = 570

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 315 LIVIICVNVSPKYG----SDTLINLGYCLRSLVSTFLQRTPAIRESL 443
           L V ICV +  KYG     D L N G+C     +T  ++  A+ + +
Sbjct: 390 LQVSICVTLDHKYGLRDLIDLLSNFGFCASYFEATLYKKNAAVTQGV 436


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,622,645
Number of Sequences: 59808
Number of extensions: 365267
Number of successful extensions: 1219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)