Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0110
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_10454| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              30   1.9  
SB_6657| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_36325| Best HMM Match : ShTK (HMM E-Value=1.2e-07)                  29   3.4  

>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 213 YLKCFNTNAKTYSDVDVEKNTIDIAIAKGQRNI-DNNYIS 97
           Y +  N N  T  D D+   + D+    G+RNI +NNY+S
Sbjct: 293 YQRVHNNNNNTIDDGDISDESDDLGPFGGRRNINNNNYVS 332


>SB_10454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 213 YLKCFNTNAKTYSDVDVEKNTIDIAIAKGQRNI-DNNYIS 97
           Y +  N N  T  D D+   + D+    G+RNI +NNY+S
Sbjct: 194 YQRVHNNNNNTIDDGDISDESDDLGPFGGRRNINNNNYVS 233


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 201  FNTNAKTYSDVDVEKNTIDIAIAKGQRNIDN 109
            +NT  K Y ++D+EK+ ++  IA  Q+ ID+
Sbjct: 2399 YNTLQKNYDNLDLEKHKLEDKIASMQKTIDH 2429


>SB_6657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -2

Query: 409 MPWDLTFQD-RRQHPHYDKADEA 344
           MP+ +TF D  ++ PHYDK++EA
Sbjct: 102 MPYAMTFNDLTKKCPHYDKSEEA 124


>SB_36325| Best HMM Match : ShTK (HMM E-Value=1.2e-07)
          Length = 45

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 111 NNYISLCLW*R*LDAEKIKNRNWISNETPVRVTSCR 4
           + Y+S   W   L  + IKN+ W+SN  P    +CR
Sbjct: 4   DKYVSCTTWA--LGGDCIKNKEWMSNNCPRTCKTCR 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,069,948
Number of Sequences: 59808
Number of extensions: 466018
Number of successful extensions: 1095
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)