Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0106
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   9e-10
SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)             29   3.2  
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)                 28   5.7  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)                28   7.5  
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)               28   7.5  
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)                      28   7.5  
SB_7501| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 26/62 (41%), Positives = 43/62 (69%)
 Frame = +1

Query: 250 EEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKXK 429
           ++A+  A++ +KW ++ WA+KLA ++KRA + D+DRFKL  A+ K+NR      K LK +
Sbjct: 282 KKAFEAAQVQDKWEQTAWARKLAMRKKRATLNDFDRFKLKLAKQKKNRLLRTEVKKLKKE 341

Query: 430 AE 435
           A+
Sbjct: 342 AK 343


>SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)
          Length = 347

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 225 AYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNF 97
           AY+ R++  WS+ K  C +  P+   S S  + +IT  TL  +
Sbjct: 87  AYIIRDYFSWSFGKIACQIIIPMNDVSFSVSICTITVITLERY 129


>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
          Length = 337

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 68  ALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIR-LNQLHLTKF 211
           +L+ D  L  + VS VDV   + A+VD P +   RQ ++ ++  H   F
Sbjct: 70  SLIGDYDLFAREVSTVDVRIASHAIVDRPRASWKRQSLKGISNFHFLAF 118


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +1

Query: 208  IPPQ---IRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 378
            IPP+   +R    ++SC       + NE W +        +K     ++D  RFK+  A 
Sbjct: 1695 IPPRPIGLRCTDKHASCPSFAKSRRCNENWVKKNCKLSCQSKHCDRDLSDQTRFKVKKAH 1754

Query: 379  V 381
            +
Sbjct: 1755 L 1755


>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 246 RRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGP 148
           +RV   +AY   N + W W++R+   G  + GP
Sbjct: 122 KRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154


>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 246 RRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGP 148
           +RV   +AY   N + W W++R+   G  + GP
Sbjct: 122 KRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154


>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
          Length = 766

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 170 RQQIRLNQLHLTKFRLKYAFTAPTRLVRKRGQMLNSMKNGQK 295
           R+ I    LH    + KY +T P RLVR+   + N+   GQ+
Sbjct: 203 RRSITTQHLHAWSEK-KYYYTTPARLVREEVLLHNTCTPGQR 243


>SB_7501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 88  GTVGYQGDTPWFYVPCKRQNVL 23
           GT+GY   T W +    RQNV+
Sbjct: 442 GTIGYASQTAWVFSGTVRQNVM 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,118
Number of Sequences: 59808
Number of extensions: 357351
Number of successful extensions: 942
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)