Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0105
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)                30   1.9  
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_21593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          28   7.7  

>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
          Length = 434

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 345 SVHKLLPKIMIGHTSCTICTRDLKISKCP 431
           S H  +  I  GHT C +CTRD +  KCP
Sbjct: 245 SRHTPVALIPCGHTFCQMCTRDCR--KCP 271


>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 551 PGAC-CPCIKGI-SNSCHQMKECEMSDHS 471
           PG+  C C+KG   + CH   ECE  +H+
Sbjct: 580 PGSYKCMCLKGYHGDDCHDANECERGEHT 608


>SB_21593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 332 RIGMECPQTASENHDRSYKLYNMYKRPENLEVPLSATRDAKNSVYAMNDQTFHTPSFGD 508
           R+GM   Q   E H ++   + ++K  E + VP+  ++  K     MND  +   + GD
Sbjct: 24  RMGMTECQNTDEVHKKTTHRHGLWKHDEMITVPMMISQMMK---VVMNDDDYKEDNLGD 79


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 338 GMECPQTASENHDRSYKLYNMYKRPENLEVPLSATRDAKNSVYAMNDQTFHTPSFG 505
           G +CP T+    D       M++     E+   A + ++N+ ++ N Q+F TP  G
Sbjct: 784 GDDCPSTSQREDDNPVS--KMFQE----EIRARARKYSQNTGFSQNQQSFSTPEHG 833


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,262,963
Number of Sequences: 59808
Number of extensions: 470058
Number of successful extensions: 1402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)