Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0048
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 35 0.050
SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026) 35 0.050
SB_6319| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.066
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_57452| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12) 30 1.9
SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2) 30 1.9
SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5) 29 2.5
SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8) 29 2.5
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 29 3.3
SB_322| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_41384| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083) 28 5.7
SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7) 28 7.6
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 35.1 bits (77), Expect = 0.050
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -3
Query: 463 KGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFELQHLK 284
K ++ ++E LTK R D S + + WT DG I V L +K E + L+ LK
Sbjct: 193 KKDKLRVNEDLTKGRLDAIKAINSKLDIYKLWTIDGTIHVRLNKDKDKAKEIIHSLRQLK 252
>SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)
Length = 301
Score = 35.1 bits (77), Expect = 0.050
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -3
Query: 463 KGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFELQHLK 284
K ++ ++E LTK R D S + + WT DG I V L +K E + L+ LK
Sbjct: 232 KKEKLRVNEDLTKGRLDAIKAINSKLDIYKLWTIDGTIHVRLNKDKDKAKEIIHSLRQLK 291
>SB_6319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = -1
Query: 651 DATDPAPAIVGILTNQMKVAGCTEEDLTACYRLGSNTNKPRPILVRFLV*GDAMKCGRTR 472
D +P +V + +MK+ +L +R+G++ RP++ +FL D + G+
Sbjct: 42 DGENPHEVLVNTMKVEMKLQNVDAVELERVHRIGNSKTSSRPLVAKFLRFQDRERVGKNA 101
Query: 471 HS 466
H+
Sbjct: 102 HA 103
>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.5 bits (68), Expect = 0.62
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 466 LKGSRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFEL 296
L + + ISE LT + +F L + F K WT GK VL+ ++ S Q+ L
Sbjct: 297 LADNSIYISESLTANNKAIFKGALSFKKEFRFKFIWTVHGK--VLIRKDEHSPAIQIKSL 354
Query: 295 QHL 287
QHL
Sbjct: 355 QHL 357
>SB_57452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = -3
Query: 457 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 290
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 27 NKIYISESLSPGNRELFKAELSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 86
Query: 289 LKTKFPSAQKAQELLS 242
LK + Q +QE+ S
Sbjct: 87 LKQR--EDQDSQEVES 100
>SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 457 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 290
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 123 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 182
Query: 289 LKTK 278
LK +
Sbjct: 183 LKQR 186
>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
Length = 792
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 457 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 290
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 123 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 182
Query: 289 LKTK 278
LK +
Sbjct: 183 LKQR 186
>SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2)
Length = 280
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 457 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 290
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 201 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 260
Query: 289 LKTK 278
LK +
Sbjct: 261 LKQR 264
>SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5)
Length = 270
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -3
Query: 457 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 290
+++ ISE L+ ++F L AR K WT +GK+ + D + I + +L H
Sbjct: 191 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDGQAVLISKSQDLLH 250
Query: 289 LKTK 278
LK +
Sbjct: 251 LKQR 254
>SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)
Length = 841
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = -3
Query: 463 KGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKI----EQMFEL 296
K + ++E LTK R D + + WT D I V L +K +I Q+ +L
Sbjct: 735 KKEKFRVNEDLTKGRLDAIKAINVKLDIYKLWTIDVTIQVRLNKDKAKEIIHSLRQLKDL 794
Query: 295 QHLKTKFPSAQKAQELLSHLGNLMTNPRRHQNQRQ 191
Q L K + E + +L + P +QN +
Sbjct: 795 QQLIEKVLDTENQNE--QNTEHLNSMPFSNQNNNE 827
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = -3
Query: 523 ISQVPSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIV 344
I +VP+ +C+ KT+ K + + E +H E V WT +
Sbjct: 1728 IHKVPASLKCDNC--EKTIRKNQKSVACEVCFGQQHIKCTELNVKC-VNATWTCPKCTLS 1784
Query: 343 LLPDNKRSKIEQMFELQHLKTKFPSAQKAQELL-SHLGNL 227
+LP + + I+ FE + + S Q E L H NL
Sbjct: 1785 VLPFHNIASIDTSFEEMDSNSAYDSTQLISETLKEHSNNL 1824
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 310 QMFELQHLKTKFPSAQKAQELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESS 152
Q ++QH++ + Q+ Q L HL RRHQ Q+Q ++ + + +E S
Sbjct: 281 QQQQVQHMQQQ--RLQQQQLLQQHLQRQQQQQRRHQQQQQQQQLHQQQRLEQS 331
>SB_322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 278 VSLGSKSAGAPQSSGKSHDEPKTAPKSAAEREI 180
+SL SK AG P++ E KT K+AAE EI
Sbjct: 145 LSLDSKMAGTPENVWNHITELKTKSKNAAEWEI 177
>SB_41384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 646 HRPSTSNC--GYINQPNEGGWLHRRGLNCLLSV 554
H PS + G+ ++PN G W+ R C+L V
Sbjct: 108 HGPSGNRSAPGHFDRPNNGSWIQRGPPKCILHV 140
>SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083)
Length = 497
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = -3
Query: 457 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 290
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + + H
Sbjct: 150 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNKDSQAVLISKSQDSLH 209
Query: 289 LKTK--FPSAQKAQEL 248
LK + S ++A EL
Sbjct: 210 LKQREDHDSQEEAIEL 225
>SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 676
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 264 KKRRSSSVIWEIS*RTQDGTKISGRARNRQEDDSSKVVWR 145
+KRRS+ ++ S T+D +++ R R++ K W+
Sbjct: 4 RKRRSAFSVYRASSGTEDEPEVNARERSKNTPSEPKTPWQ 43
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,587,828
Number of Sequences: 59808
Number of extensions: 429880
Number of successful extensions: 1192
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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