Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a07
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.4  
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                27   9.4  
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                  27   9.4  

>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 451 SGRSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERRS 311
           S +SP+ P  RTT   S ++S       + R++ R    +SS +RR+
Sbjct: 155 SSKSPSPPTNRTTQGESPKTSSSGHGQHSSRTAVRRSASFSSSQRRT 201


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 470 TASYNIKRPVADIPQHPNHDSEQPPELLKAAVPRRGAKL 354
           T +++I  PVA +PQ P   ++QP     A+  +  AK+
Sbjct: 338 TVAHSIPAPVASVPQPPPQPAQQPASHPSASSRQDEAKV 376


>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +1

Query: 304 PFP---SDAP---LTSMDVERALSFAPRRGTAAFKSSG 399
           PFP   SDA    L S DV  A SF P  G  +++SSG
Sbjct: 435 PFPANESDARAHRLCSNDVAMATSFEPSNGAQSYRSSG 472


>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 233 GSKVISEPPYPNKNCDGRLKSR 298
           G +V+S+PP P K C  R KSR
Sbjct: 424 GQEVVSKPPRPQKKCTTR-KSR 444


>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 259

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 256 RLTDHFTTASNGSDSSSRGTEYST 185
           RLT++  +ASNGSD  +   E ST
Sbjct: 2   RLTNYTLSASNGSDDETSNKEVST 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,612,850
Number of Sequences: 59808
Number of extensions: 287114
Number of successful extensions: 890
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)