Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b03
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)        44   2e-04
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 29   3.7  
SB_39473| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)                  29   4.9  
SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 28/36 (77%)
 Frame = +3

Query: 579 DFHLNATELLKKHQYPVEEHTVATDDGYHLTVLRIP 686
           + H+N T+L++ + YPVE++ V T+DGY L+V RIP
Sbjct: 293 EVHMNVTQLIQYNGYPVEDYDVTTEDGYILSVQRIP 328


>SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)
          Length = 991

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +3

Query: 540 HDAISETQRENNEDFHLNATELLKKHQYPVEEHTVATDDGYHLTVLRIP 686
           H   +  +   + D   NA++L++   YPVEEH V T DG+ L + RIP
Sbjct: 90  HREATTDEPPRDPDIDRNASQLIRNRGYPVEEHYVTTSDGFILNLQRIP 138


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 507 HFTDDAKKNTFHDAISETQRENNEDFHLNATELLKKHQYPVEEHT 641
           H+TD+AK +     ++  + +   DF+ N T+  ++ Q  VEE T
Sbjct: 552 HYTDEAKTSDADSNVANGETQAKHDFNKNTTKTAEQTQ-SVEEKT 595


>SB_39473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 71  LQHLHDETTQSG*HHSTPSGLCRTADPSAETKTTQANLEQEEPP 202
           ++  HDET +     S+  G+ +  DPSA+ +  Q  ++ E  P
Sbjct: 5   MEREHDETNEEESDSSSDEGMEQDKDPSADAEIHQLEVQLETNP 48


>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
          Length = 1605

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 456 TEQDIEDIFGDSLKTWDHFTDDAKKNTFHDAISETQRENNEDFHLNATELLKKHQYPVE 632
           TE D   +  D+L+  D  T  AKK  FHDA    ++ +NE+  +     L++ +Y  E
Sbjct: 336 TEGDWRALALDALEGLDFET--AKKGKFHDAAKLYKKTSNEEKAMEMFSDLRQFEYAKE 392


>SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 303 TKQVHDKMNVKHHSPVYSVIMKLKKEVDINHGDSVVWKN--IEMASGPNSPVQTEQDIED 476
           TK++H  M     +P    I ++  EVD + G+ V+  N  +++      P + EQD+ +
Sbjct: 167 TKELHKAMRTLGFNPTEEEIQEMVNEVDYD-GNGVLDFNEFVDLMENQKKPDEEEQDLIN 225

Query: 477 IF 482
            F
Sbjct: 226 AF 227


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 88  RNNTVRMTSFNTLWTMSNSRSISRNKNYTSKP*TRGATS 204
           + NT+ MTS  T+         S++ N TSK  T+G  S
Sbjct: 750 QENTIDMTSHGTIMISKKRELTSQDANKTSKKTTKGLPS 788


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,489,481
Number of Sequences: 59808
Number of extensions: 359683
Number of successful extensions: 985
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)