Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b02
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   4.4  
SB_46952| Best HMM Match : Gemini_AL2 (HMM E-Value=1.3)                28   5.8  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     28   5.8  
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_5332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   GTRAAQRDCARVPACNATAP 60
           G R  QR   RVP CN TAP
Sbjct: 131 GIRRTQRISPRVPTCNGTAP 150


>SB_46952| Best HMM Match : Gemini_AL2 (HMM E-Value=1.3)
          Length = 258

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 97  PAASSDVARPLDWPRY*RDSPRRLATRQTRISIMG 201
           PA+  DV  P   PRY RD  RR + +  RIS+ G
Sbjct: 19  PASLPDVD-PSRLPRYLRDPTRRSSLQPRRISVQG 52


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 70  WGRVGPVRRPAASSDVARPLDWPR 141
           WG V P  RP   SDV   +DW R
Sbjct: 504 WGWVCPQARPKVFSDVLAAMDWIR 527


>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 70  WGRVGPVRRPAASSDVARPLDWPR 141
           WG V P  RP   SDV   +DW R
Sbjct: 753 WGWVCPQARPKVFSDVLAAMDWIR 776


>SB_5332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = -2

Query: 571 KNILK*RKSIGDEF-TSELTRDSASHA*N*DRLTYHYELNLNYMQIYRYKDVI 416
           K+++K + S   E  T++L R ++SH+ + DRLT    +++   Q+ RY +++
Sbjct: 34  KHLVKYKASEAQELETAKLARTASSHSAHDDRLTKAALIHVRVGQLQRYCELM 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,040,342
Number of Sequences: 59808
Number of extensions: 366188
Number of successful extensions: 806
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)