Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a23
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   8e-11
SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   8e-11
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   3e-10
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               46   2e-05
SB_46811| Best HMM Match : Ferritin (HMM E-Value=0.0021)               36   0.025
SB_44028| Best HMM Match : RVT_1 (HMM E-Value=1.3)                     35   0.058
SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.31 
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)         31   0.71 
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)         31   0.71 
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)                31   0.71 
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.71 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 30   1.2  
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     28   5.0  
SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)                    28   6.6  
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 27   8.8  

>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 38/92 (41%), Positives = 49/92 (53%)
 Frame = +1

Query: 325 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 504
           + KQI  E+ AS  Y++M  +F  D V  PGF K F  A+ EEREHA KL  + L RG  
Sbjct: 135 VNKQINLELYASYVYMSMAYHFDRDDVALPGFHKYFMKASHEEREHAEKLAKFQLQRG-- 192

Query: 505 TGSVTDLITYRAPANTSWESGASALEHALKLE 600
            G +  L   + P    W  G  A++ AL LE
Sbjct: 193 -GRIV-LQDIKRPERDDWGCGQDAIQAALDLE 222


>SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 38/92 (41%), Positives = 49/92 (53%)
 Frame = +1

Query: 325 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 504
           + KQI  E+ AS  Y++M  +F  D V  PGF K F  A+ EEREHA KL  + L RG  
Sbjct: 18  VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKYFIKASHEEREHAEKLAKFQLQRG-- 75

Query: 505 TGSVTDLITYRAPANTSWESGASALEHALKLE 600
            G +  L   + P    W  G  A++ AL LE
Sbjct: 76  -GRIV-LQDIKRPERDDWGCGQDAIQAALDLE 105


>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 37/92 (40%), Positives = 49/92 (53%)
 Frame = +1

Query: 325 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 504
           + KQI  E+ AS  Y++M  +F  D V  PGF K F +A+ EEREHA KL  + L RG  
Sbjct: 150 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKYFMEASHEEREHAEKLAKFQLQRG-- 207

Query: 505 TGSVTDLITYRAPANTSWESGASALEHALKLE 600
            G +  L   + P    W  G   ++ AL LE
Sbjct: 208 -GRIV-LQDIKRPERDDWGCGQDVIQAALDLE 237


>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 38/98 (38%), Positives = 51/98 (52%)
 Frame = +1

Query: 307 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYL 486
           + C   + KQI  E+ AS  YL+M  +F  D V  PGF K F  A+ EEREHA KL+ + 
Sbjct: 197 EECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKYFLKASHEEREHAEKLMKFQ 256

Query: 487 LMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLE 600
             RG   G +  L   + P    W  G  +++ AL LE
Sbjct: 257 NERG---GRIV-LQDIKKPEKDEWGCGMDSIQVALDLE 290



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 28/73 (38%), Positives = 36/73 (49%)
 Frame = +1

Query: 382 AYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWE 561
           A+F  D ++ PGFA  F  AA EE  HA   +++L  RG   G V  L     P    W 
Sbjct: 2   AHFGRDDIHLPGFAAFFKKAAEEEYTHAHMFMEFLNKRG---GRV-KLHHIMKPCRDHWG 57

Query: 562 SGASALEHALKLE 600
           +G  A+  AL LE
Sbjct: 58  NGLMAMRDALYLE 70


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 25/55 (45%), Positives = 31/55 (56%)
 Frame = +1

Query: 307 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATK 471
           + C   + KQI  E+ AS  Y +M  YF  + V+ PGF K F   A EEREHA K
Sbjct: 10  EECEAGINKQINLELYASYVYTSMACYFDREDVHLPGFHKFFKKQAHEEREHAEK 64


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +1

Query: 325 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHA 465
           + KQI +E+ A   YL+M  +F  D +N PGF K F  A+ EE EHA
Sbjct: 38  INKQINKELYAHYTYLSMAFHFDRDDINLPGFNKFFKKASKEEWEHA 84


>SB_46811| Best HMM Match : Ferritin (HMM E-Value=0.0021)
          Length = 73

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 22/54 (40%), Positives = 28/54 (51%)
 Frame = +1

Query: 439 AATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLE 600
           A+ EEREHA KL  + L RG   G +  L   + P    W  G  A++ AL LE
Sbjct: 3   ASHEEREHAEKLAKFQLQRG---GRIV-LQDIKRPERDDWGCGQDAIQAALDLE 52


>SB_44028| Best HMM Match : RVT_1 (HMM E-Value=1.3)
          Length = 249

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +1

Query: 385 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 528
           +F++  +N+PG  ++ FDAA+E +   T L  YLL     T S+T ++
Sbjct: 30  HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKYLLHGPDCTNSLTGVL 75


>SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 18/90 (20%)
 Frame = +1

Query: 385 YFSIDTVNRPGFAKLFFDAATEEREHA---------TK-----LIDYLLMR--GKLT--G 510
           +F  D +N PGF K F  A+ EE EHA         TK      I +LL +    LT  G
Sbjct: 32  HFDRDDINLPGFNKFFKKASKEEWEHAQMVKTAALQTKCYRKLTIVWLLFQFMAYLTKRG 91

Query: 511 SVTDLITYRAPANTSWESGASALEHALKLE 600
               L     P    W +G  A+E AL LE
Sbjct: 92  GRVKLNDIPTPCRDQWGNGLMAMEDALALE 121


>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 385 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 528
           +F++  +N+PG  ++ FDAA+E +   T L   LL     T S+T ++
Sbjct: 350 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 395


>SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)
          Length = 1740

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 385  YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 528
            +F++  +N+PG  ++ FDAA+E +   T L   LL     T S+T ++
Sbjct: 868  HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 913


>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
          Length = 475

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 385 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 528
           +F++  +N+PG  ++ FDAA+E +   T L   LL     T S+T ++
Sbjct: 151 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 196


>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1244

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 385 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 528
           +F++  +N+PG  ++ FDAA+E +   T L   LL     T S+T ++
Sbjct: 667 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 712


>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1515

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 385  YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 528
            +F++  +N+PG  ++ FDAA+E +   T L   LL     T S+T ++
Sbjct: 945  HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 990


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +3

Query: 273 RHHQG*VAHHGADLLQHDEETDPGGSG 353
           RHHQ   AHHG   L+HD E D  GSG
Sbjct: 811 RHHQH-GAHHG---LKHDTENDASGSG 833


>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 321 VVASLLHGEPLIPDGDGADVTLCSCGRS*GSNESEDSKENSPH 193
           V+A LL G+P+ P   G D  L    +  G+   E  KE +PH
Sbjct: 252 VLAELLLGQPIFPGDSGVD-QLVEIIKVLGTPTREQIKEMNPH 293


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 524 SSRTGPPQTRRGRAAHQPSSTPSS 595
           ++RTGPPQ+R+    H+ S+T  S
Sbjct: 419 ANRTGPPQSRQAVPRHRTSATADS 442


>SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 807

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 385 YFSIDTVNRPGFAKLFFDAATEEREHA 465
           +F + + N+PG  ++ FDAA + R ++
Sbjct: 138 HFGVTSANKPGCVRIVFDAAAKTRTNS 164


>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1808

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 231 SNESEDSKENSPHLNFSYNHRFFDDT 154
           + ES   KEN PH +   N R +D+T
Sbjct: 413 AEESTSDKENVPHCSHGNNERCYDNT 438


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 324 DEETDPGGSGRVNPVLSHGGLLLDRYGEP 410
           D   DPGG  R++  + HGG  +DR G P
Sbjct: 226 DRPMDPGGP-RMDHPMGHGGPPMDRGGPP 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,814,906
Number of Sequences: 59808
Number of extensions: 329777
Number of successful extensions: 823
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)