Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a16
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  94   1e-19
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         38   0.009
SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                31   0.81 
SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)                        29   2.5  
SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_43547| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)                  28   7.6  

>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 38/68 (55%), Positives = 56/68 (82%)
 Frame = +3

Query: 237  PITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYL 416
            P TT T+V+G+KF+ G ++A DTLGSYGSLAR+R+  R+M+VN+  ++G  GDYADFQY+
Sbjct: 871  PTTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYADFQYI 930

Query: 417  KDIIQQKI 440
            K +++QK+
Sbjct: 931  KSVLEQKV 938


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 255 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYAD 404
           TV+ +  +   VIA DT  S G     RD P+V K+    +LGC G + D
Sbjct: 89  TVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGD 138


>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 958

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 120 TPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDK 281
           TP W N     A  N P N++   P  HG+    A++  P     T + +  D+
Sbjct: 468 TPAWANADQQQAQGNNPANSNADQPQDHGIYIVNANAGHPQAQEHTPVWMNADQ 521



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 120 TPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASP 239
           TP W N     A  N P N++   P  HG+    A++  P
Sbjct: 423 TPAWVNADQQQAQGNNPANSNADQPQDHGIYIVNANADHP 462



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +3

Query: 108 TMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDK 281
           T    P W N     A  N P N+    P  HG+    A++  P     T   V  D+
Sbjct: 374 TQEHMPAWANADQQQAQGNNPANSKADQPQDHGIYIVNANADHPQAQEHTPAWVNADQ 431


>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
          Length = 1220

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 597 SRERVHHPEYRQPHSCSRGDPSCSSCCRGHESTSSAENGA*AGDHLQHSAH 445
           S +   HPE   PHS +  + S SS    H ST+  +N +    H+    H
Sbjct: 455 SSQSAEHPEDHSPHSAASVENSSSSQHLEHNSTTHDDNQS-VSSHISDHDH 504


>SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = +1

Query: 439 SLMSAVLEMVSSSSPVLCTAG*LVSSTTRGARWIPSGTAMWLPVFRMVNPFSGAVDKLGT 618
           SL+ +++ +     PVL     L++  TRG  W+P+     + +++ ++  S     L  
Sbjct: 73  SLLESLIRLQVIDEPVLRDQFDLLADLTRGQAWVPNQLKAAIMLYQALSDQSDNSQLLTM 132

Query: 619 AYEDAVISN 645
            +  AV++N
Sbjct: 133 EFVGAVMAN 141


>SB_43547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 133 KTDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAPSRPPQLSSELSLTRDVLSPVTH 306
           +T+R L   +  ++++ +   P  VYRI  + +R  S   QLS  + LT    S   H
Sbjct: 163 RTERLLTGRLQTIDLVREFGSPTNVYRIADVVRRPFSEVLQLSGVIQLTEWEFSEACH 220


>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
          Length = 297

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 500 VDSCPLQQEEQDGSPLEQLCGCRY 571
           V   PL ++ +DG+PL   CG RY
Sbjct: 228 VAKTPLWRDAEDGTPLCNACGIRY 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,211,705
Number of Sequences: 59808
Number of extensions: 458598
Number of successful extensions: 1816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)