Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b07
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_10016| Best HMM Match : FliG_C (HMM E-Value=0.6) 29 2.9
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011) 29 3.8
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24) 24 4.7
SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2) 28 6.6
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31) 28 8.8
>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 22 VIRVEAKNDYSLLACTAVYAYCCKCGQYIGRVSYASLQPPYSLQSVY 162
V+R E KN+ + + Y CG Y GRV +L PP+ V+
Sbjct: 20 VLRKEKKNNSHWVFGNVFFKYRKSCGAYEGRVCKPNLTPPFGRVKVH 66
>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/98 (25%), Positives = 48/98 (48%)
Frame = +2
Query: 65 ALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCG 244
+++S L + N+ + +P Y V+ + ++ L ++C V VV F S + G
Sbjct: 985 SIVSYLQVMVFANLFTITRSPDYIRQ-VHDLVLDMLEDECLEVRVVAADTF--SGLLHYG 1041
Query: 245 NITEVNSDMSVKQYKKLVTNSAMFRKRGVVSDTDTVTA 358
T + SVK+ + + N+ + RKR V ++TV +
Sbjct: 1042 IFT---LEKSVKEKFRKLANTKLPRKRKVGDTSETVAS 1076
>SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 257 VNSDMSVKQYKKLVTNSAMFRKRGVVSDTDTVTAA 361
V D+ ++QYK +V N R RG+ DTD+ T A
Sbjct: 231 VAKDIEIEQYKDMV-NGLQQRIRGLEMDTDSTTMA 264
>SB_10016| Best HMM Match : FliG_C (HMM E-Value=0.6)
Length = 198
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 293 LVTNSAMFRKRGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIANNQT 442
L T + R++ +V DT+ + NY G++++F + N+ +R+ + T
Sbjct: 86 LATKQSKVRRQKLVFKHDTLLSVNYFGVLKIFSGE-RNLQLRSSLVEGTT 134
>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
Length = 1178
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 62 LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNV 193
LA AV A+ + +FP AY+H YK+ + L H +
Sbjct: 990 LAACCDAAAVQALRLGGLFPYCAYTHAYTYKMIADQLWSAMHEI 1033
>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +2
Query: 62 LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTV----VKPKLFAYST 229
LA AV A+++ +FP AY++ YK+ + L H+V V PK T
Sbjct: 387 LAACCDAAAVPALHLGGLFPYCAYTYTYTYKIIADQLWSAMHDVAAAAKRVTPKKDRLGT 446
Query: 230 KTYCGN-ITEVNSDMSV 277
GN + E ++ ++V
Sbjct: 447 TRADGNRLLETDTPVAV 463
>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
Length = 333
Score = 24.2 bits (50), Expect(2) = 4.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 64 CTAVYAYCCKC 96
CT +YAY C C
Sbjct: 255 CTRIYAYVCAC 265
Score = 23.0 bits (47), Expect(2) = 4.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 61 ACTAVYAYCC 90
ACT +YAY C
Sbjct: 246 ACTCIYAYLC 255
>SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2)
Length = 360
Score = 28.3 bits (60), Expect = 6.6
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Frame = +2
Query: 56 CWLALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKT 235
C + L S L + +A+ P SH++V E LA + H V+V + Y+
Sbjct: 6 CTVLLFSVLACECSGIKIAMMPQFGRSHYLVMSKLAEELASRGHEVSVYVGEEADYAIGK 65
Query: 236 YCGNITEVNSDMSVKQYKKLVTNSAMFRKRGVVSDTDTVTA-ANYLGLIEMFKDQFDN-I 409
N+ N +++ S + R + S T +A + GL+ + K D+ +
Sbjct: 66 --PNVKAFNVPQGLRE-------SFLGNLRAIASSKGTTSANEEFEGLVSLQKIYCDSFL 116
Query: 410 NVRNLIANNQTFDLVVVEAFADY 478
N +++ T D++++ Y
Sbjct: 117 NSSSMMREVGTSDVLLMSGLTRY 139
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 62 LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKL 214
LA AV A+++ +FP AYS+ YK+ + L H V ++
Sbjct: 1227 LAACCDAAAVPALHLGGLFPYCAYSYTYTYKMIADQLWSAMHEVAAAAKRV 1277
>SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +2
Query: 62 LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTV----VKPKLFAYST 229
LA +V A+++ +FP AY++ YK+ + L H V V PK T
Sbjct: 369 LAACCDAASVPALHLGGLFPYCAYTYAYSYKMIADQLWSAMHEVAAAAKRVTPKKDRLGT 428
Query: 230 KTYCGN-ITEVNSDMSV 277
GN + E N+ ++V
Sbjct: 429 TRADGNRLLETNTSVAV 445
>SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 151 VDYMVAVSWRRKHGQYIDRIYSSKRRQQCKPAK 53
V YM A SW +H Q I + K+ Q KP K
Sbjct: 361 VRYMTA-SWTTRHSQSISKSNMDKQAQSIKPKK 392
>SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)
Length = 516
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 148 DYMVAVSWRRKHGQYIDRIYSSKRRQQCKPAKNSHFLLQPE 26
DY+ + S H Y D + SS R QC P N L QP+
Sbjct: 188 DYLGSSSLAHGHAMY-DSLGSSSRYPQCPPGFNPLALHQPK 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,528,983
Number of Sequences: 59808
Number of extensions: 507650
Number of successful extensions: 1300
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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