Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b01
(355 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06) 28 2.5
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1) 27 4.4
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 26 7.7
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 26 7.7
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 26 7.7
SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26) 26 7.7
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 26 7.7
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 26 7.7
>SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 43.6 bits (98), Expect = 5e-05
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 168 HWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 305
+WS+KA MRHLK+V RRF+NGF+EG + KK VA++
Sbjct: 2 NWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQEGTQAKSQKKNVAAA 48
>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
Length = 819
Score = 27.9 bits (59), Expect = 2.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 111 CDMTIYHIFCITYGSYFGA 55
CD +IYHI+ + Y ++GA
Sbjct: 355 CDSSIYHIYRLKYAVHYGA 373
>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
Length = 364
Score = 27.1 bits (57), Expect = 4.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +2
Query: 137 WISCSKITILPLVSEG*AQEDYWNWPHASF 226
W++C K+ +LP+ ++ Y W + F
Sbjct: 136 WVNCDKVRLLPMRADEVGARVYARWTNGQF 165
>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 27.1 bits (57), Expect = 4.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +2
Query: 137 WISCSKITILPLVSEG*AQEDYWNWPHASF 226
W++C K+ +LP+ ++ Y W + F
Sbjct: 297 WVNCDKVRLLPMRADEVGARVYARWTNGQF 326
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 176
R NK C CG S QKS C G + + HW+
Sbjct: 217 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 257
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 176
R NK C CG S QKS C G + + HW+
Sbjct: 43 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 83
>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1124
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 235 SGGASVMVLKKGNQRRPRR 291
S G+ V +L+K N+RRP++
Sbjct: 259 SNGSGVFILQKPNERRPKK 277
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 176
R NK C CG S QKS C G + + HW+
Sbjct: 218 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 258
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 176
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26)
Length = 245
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 176
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 176
R NK C CG S QKS C G + + HW+
Sbjct: 135 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 175
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 176
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 176
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQVQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,248,521
Number of Sequences: 59808
Number of extensions: 189244
Number of successful extensions: 744
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -