Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a17
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 279 2e-75
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05) 29 3.1
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 28 5.5
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2) 28 5.5
SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3) 28 5.5
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1) 28 5.5
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087) 28 7.2
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22) 27 9.6
SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08) 27 9.6
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 27 9.6
SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10) 27 9.6
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 27 9.6
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 27 9.6
SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5) 27 9.6
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063) 27 9.6
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 27 9.6
>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 279 bits (683), Expect = 2e-75
Identities = 129/164 (78%), Positives = 149/164 (90%)
Frame = +1
Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 300
MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DWKGLKITV
Sbjct: 1 MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60
Query: 301 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 480
LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV +AK+MR RS
Sbjct: 61 CLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVAKVMRPRS 120
Query: 481 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 612
MAR+LSG+VKEILGT QSVGCTV+G PHD+ID INSG + I++
Sbjct: 121 MARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSGEIEIED 164
>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
Length = 302
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 289 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 420
++ ++ RQ + +PSA IR +E PR +K N+KH
Sbjct: 97 RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 448 IGIAKIMRNRSMARYLSGS-VKEILGTAQSVGCTVEGRPP 564
+G K++++R G V+ + GT S+ C VEG PP
Sbjct: 128 VGTHKLLKSRDPVIVTIGDKVETLTGTEVSIICPVEGLPP 167
>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 671
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 193 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 363
T L P ++ PLGL PKK+ D ++ S KGL + +++++ + A + A + I
Sbjct: 369 TPPLVPFRVSPLGLVPKKLPGDFRLSHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 428
>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
Length = 193
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 523 TAQSVGCTVEGRPPHDLIDDINSG 594
T + C VE PPH++ D +N G
Sbjct: 150 TLNQLYCPVEPNPPHNMFDHVNLG 173
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = -1
Query: 396 TVTRRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITH 244
+++ + GSD+K CC G + LG+ + +HSD++ P+ L + H
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLH 163
>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
Length = 2568
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 181 EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPS 348
E+G T + + LG PK V +D +DW + + IA+ PS
Sbjct: 1793 ELGITDAEGNYVDSLGADPKAVSNDYVGYATDWVNNNLPENAITNSTWTGIALGPS 1848
>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
Length = 1333
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +3
Query: 441 RCNRHCEDHEKQINGP----VPFWLSKRDSWHSTVSWMYCGGQA 560
RC RH + H +IN + +W +SW+ SW+Y G +A
Sbjct: 982 RCFRH-DRHPIRINNETRRDLVWWQQFLESWNGVSSWLYPGLEA 1024
>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 217 GPLGLSPKKVGDDIAKATSDWKG 285
GPLG+ +++ D ++SDW G
Sbjct: 337 GPLGMEDRRIQDSQINSSSDWDG 359
>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
Length = 453
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -2
Query: 344 GTTAIWACLF*TVSCTVILRP--FQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 171
G IW T T+ L+ F +L +A + D+ +G I + +AP S
Sbjct: 271 GALRIWTVAKSTPVATIRLKKTGFHALAVIATQNTNSRTDQSQGAISSTSEAIAPPSMSN 330
Query: 170 HRKFTI 153
+ FT+
Sbjct: 331 KQDFTL 336
>SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
Length = 421
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 309 CQLHSDLETLPVTCGLGNVI 250
C++HS ET P+T + N+I
Sbjct: 118 CKIHSFFETFPITINIANLI 137
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 193 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 363
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A + I
Sbjct: 465 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 524
>SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 284 PFQSLVALAMSS--PTFLGDRPRGPILGAKDDVAPTSP 177
PF +L+ SS F+ DRPRGP G D + P
Sbjct: 360 PFNALIVGPTSSGKTRFIVDRPRGPFRGKFDYIVLVCP 397
>SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)
Length = 291
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -2
Query: 344 GTTAIWACLF*TVSCTVILRP--FQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 171
G IW T T+ L+ F +L +A + D+ +G I + +AP S
Sbjct: 109 GALRIWTVAKSTPVATIRLKKTGFHALAVIATQNTNSRTDQSQGAISSTSEAIAPPSMSN 168
Query: 170 HRKFTI 153
+ FT+
Sbjct: 169 KQDFTL 174
>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
Length = 646
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 139 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 249
P+ +L+C G E TSS+ P +G LG K G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 399 KAEKYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSWHST 530
+ E+ T+ P RC R ++HE + P+P+ LS R+ +T
Sbjct: 393 RCERDSTEHDDSP-RCVRDSKEHEADTSSPLPY-LSLREKLSTT 434
>SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 193 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 363
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A + I
Sbjct: 48 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 107
>SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)
Length = 386
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 193 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 363
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A + I
Sbjct: 263 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 322
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 145 EIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQN 318
E V +G + + + PLGL PKK+ D + S KGL + +++++
Sbjct: 306 EHSTVRYATIGDAISKIRAAGRGVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEH 365
Query: 319 RQAQIAVVPSAAALI 363
+ A + A + I
Sbjct: 366 STVRYATIGDAISKI 380
>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
Length = 773
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +3
Query: 441 RCNRHCEDHEKQINGP----VPFWLSKRDSWHSTVSWMYCGGQA 560
RC RH + H +IN + +W +SW+S W+Y G +A
Sbjct: 197 RCFRH-DRHPIRINNETRHDMAWWQQFLESWNSVSFWLYPGLEA 239
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 193 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 363
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A + I
Sbjct: 444 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 503
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,542,758
Number of Sequences: 59808
Number of extensions: 432870
Number of successful extensions: 1058
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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