Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a11
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 208 4e-54
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 194 7e-50
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 6e-38
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 145 3e-35
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 4e-32
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 109 2e-24
SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05) 89 3e-18
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 87 2e-17
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 57 1e-08
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 47 2e-05
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 45 7e-05
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 44 1e-04
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 43 3e-04
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 41 8e-04
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 41 8e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 39 0.004
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.004
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.013
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 36 0.023
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.031
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 36 0.041
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 36 0.041
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 35 0.054
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 35 0.054
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 35 0.071
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.094
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_25641| Best HMM Match : VWA (HMM E-Value=1.4e-37) 33 0.16
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 33 0.22
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 33 0.22
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 32 0.38
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 31 1.2
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 31 1.2
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 31 1.2
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 30 2.0
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 30 2.0
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 29 2.7
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38) 29 3.5
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.7
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44) 28 8.1
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 208 bits (507), Expect = 4e-54
Identities = 100/176 (56%), Positives = 131/176 (74%), Gaps = 2/176 (1%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLG 343
RVY+G LP+G E D+ +FF+ +GR+RDI +KN YGFVEFED RDADDAVYE NGKE+LG
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDRDADDAVYECNGKEMLG 63
Query: 344 ERVVVEPARGIDRSAD-RYRRG-DRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRISW 517
ER++VE +RG RS+ R RG D++ PP RT +R+ +ENLSSR+SW
Sbjct: 64 ERILVEHSRGGARSSSSRPSRGRDKYG-------------PPVRTPWRMTIENLSSRVSW 110
Query: 518 QDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRLV 685
QDLKD+ RQ G+VTY DAHKQ + EGV+EF+ D++ A++KLDG ELNG+R+RL+
Sbjct: 111 QDLKDFCRQVGDVTYGDAHKQRQGEGVIEFSCKRDLKRALKKLDGEELNGKRIRLI 166
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 194 bits (472), Expect = 7e-50
Identities = 97/171 (56%), Positives = 120/171 (70%), Gaps = 4/171 (2%)
Frame = +2
Query: 182 LPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE 361
LP VRE D+EKF +G+G+IRDI +K GYGFVEF+D+RDA+DAV++LNG++L+GERVVVE
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVE 755
Query: 362 PARGI-DRSADRYRR---GDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRISWQDLK 529
++G R RR G PP RT Y +IVENLSSR SWQDLK
Sbjct: 756 FSKGRRSEGGGRDRRDFSGRGGRDGGRRPMWLDKYGPPVRTNYSVIVENLSSRTSWQDLK 815
Query: 530 DYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
DY R+ G+VTYADAHK+ EGVVEF + D+ AIEKLD TEL GRR+R+
Sbjct: 816 DYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTELGGRRIRV 866
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 154 bits (374), Expect = 6e-38
Identities = 86/178 (48%), Positives = 109/178 (61%), Gaps = 4/178 (2%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 340
+RVY G LP RERDLEKF +G+GR+R+I +K GYGFVEF+DYRDADD VY+LNG+ LL
Sbjct: 5 TRVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYGFVEFDDYRDADDCVYDLNGRNLL 64
Query: 341 GERVVV----EPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSR 508
GER + I R A Y + +I L+
Sbjct: 65 GEREIACLHYYTVNVIYRDA-IYTVNVIYREYYMESARVQFLFTSCAVRCSVIALCLTCY 123
Query: 509 ISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
I QDLK+YM + GEVT+ADAHK+ + EGVVEFAT DM+ A++KLD TE G+R+RL
Sbjct: 124 IP-QDLKEYMGKVGEVTFADAHKRRQGEGVVEFATKDDMKTALKKLDDTEFFGKRIRL 180
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 145 bits (352), Expect = 3e-35
Identities = 72/176 (40%), Positives = 102/176 (57%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKE 334
+ +VY G LP E+DLE K FG++R++ K GY +V F++ +DAD AV LN E
Sbjct: 1 MSGKVYCGRLPATATEKDLENLVKVFGKVREVDFKEGYAYVVFKENKDADRAVAALNNSE 60
Query: 335 LLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRIS 514
G ++++E A+ + Y + PP R+E+R+IVENLS+R
Sbjct: 61 FHGAKILMEKAKEMRNGVGGYTAAGGYTARTRQMG------PPVRSEFRVIVENLSTRAK 114
Query: 515 WQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
W +LK++M AGEV YAD H++ EGVVEF T DM+ AI LD E G+R+RL
Sbjct: 115 WLELKEFMNNAGEVCYADTHRRRPGEGVVEFTTEEDMKRAIASLDKCEFYGKRIRL 170
>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 109 bits (261), Expect(2) = 4e-32
Identities = 50/75 (66%), Positives = 58/75 (77%)
Frame = +2
Query: 461 PTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIE 640
P TEYRLIVENLS+R WQDLKDYMRQAGEVT+ HK EGV +F+ SDM A++
Sbjct: 338 PYNTEYRLIVENLSTRAGWQDLKDYMRQAGEVTFTQCHKDRVGEGVCDFSNESDMLYALK 397
Query: 641 KLDGTELNGRRVRLV 685
KLDGTEL G+R+RLV
Sbjct: 398 KLDGTELFGKRIRLV 412
Score = 47.2 bits (107), Expect(2) = 4e-32
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +2
Query: 275 VEFEDYRDADDAVYELNGKELLGER 349
+EF+D RDADDAVYELN KELLGER
Sbjct: 310 LEFDDARDADDAVYELNHKELLGER 334
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 109 bits (262), Expect = 2e-24
Identities = 73/179 (40%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYG------FVEFEDYRDADDAVYELN 325
RVYVG LP VRE+DL F +G I D+ +KN G FVEFED RDA+DAV +
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRD 321
Query: 326 GKELLGERVVVE-PARGIDRSADRYRRGDRHXXXXXXXXXXXXXX-------PPTRTEYR 481
G E G R+ VE P G R G PP R+++R
Sbjct: 322 GHEFDGYRIRVEFPRGGSGRGGGGGGGGGGGGGGGGGGRGGGGGFSSRGRGPPPRRSDFR 381
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTE 658
+ V L SWQDLKD+MR+AG+V + D K GVVEFA + DM+ AI LD ++
Sbjct: 382 VQVSGLPPTGSWQDLKDHMREAGDVLFTDVFKD--GTGVVEFARYDDMKFAIRNLDDSK 438
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEG----VVEFATHSDMRAAIEKL 646
R+ V NL + +DL D + G + D K R G VEF D A++
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDL-KNRRGAGPPFAFVEFEDPRDAEDAVKGR 320
Query: 647 DGTELNGRRVRL 682
DG E +G R+R+
Sbjct: 321 DGHEFDGYRIRV 332
>SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)
Length = 282
Score = 89.0 bits (211), Expect = 3e-18
Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Frame = +2
Query: 344 ERVVVEPARGIDR----SADRYR-RGDRHXXXXXXXXXXXXXXPPTRTEY-----RLIVE 493
+R++VEPARG + S R R R +R P T + + +
Sbjct: 113 KRILVEPARGTSKGGYSSGRRGRARDNREPIKSGLVAGTVTLVSPLYTLFTTLPLQCVPV 172
Query: 494 NLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRR 673
N+S QDLKDY RQ G+VTY DAHKQ + EGV+EFAT D++ A+ KLDG EL G+R
Sbjct: 173 NVSLTYFVQDLKDYCRQIGDVTYGDAHKQKQGEGVIEFATKKDLKKALRKLDGKELKGKR 232
Query: 674 VRLV 685
+RL+
Sbjct: 233 IRLI 236
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 257 KNGYGFVEFEDYRDADDAVYELNGKELLGERV--VVEPARGIDRSADRYR 400
K G G +EF +D A+ +L+GKEL G+R+ + +R RS R R
Sbjct: 202 KQGEGVIEFATKKDLKKALRKLDGKELKGKRIRLIDSRSRSPRRSKSRSR 251
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 86.6 bits (205), Expect = 2e-17
Identities = 39/66 (59%), Positives = 54/66 (81%), Gaps = 2/66 (3%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGR--IRDILIKNGYGFVEFEDYRDADDAVYELNG 328
+ +RVY+G LP+G RE D++KFF +GR IR+I++K+GYGFVEF+ DA+DAVYE NG
Sbjct: 1 MSNRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFDYSDDAEDAVYECNG 60
Query: 329 KELLGE 346
K++LGE
Sbjct: 61 KKMLGE 66
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
SRVY+G + +R++E+ F+ FG +RD+ + G+ F FED RDA+DAV EL+G+
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGR 61
Query: 332 ELLGERVVVEPARGIDRSADRYRRGDR 412
+ G+R VE A+G R R ++
Sbjct: 62 YICGQRARVELAKGPSRGRPRQASNEK 88
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/75 (40%), Positives = 48/75 (64%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
G++++VG L + RDLE F +G++ +K YGF+E+ED RDA++A+ N ++L
Sbjct: 5 GTQLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYGFIEYEDPRDAEEAMRRENNRKL 64
Query: 338 LGERVVVEPARGIDR 382
G R+VVE R +R
Sbjct: 65 FGSRIVVEYVRSGER 79
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
++VY+G L +R++E F +G ++D+ + G+ F F+D RDA+DAV EL+G+
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGR 91
Query: 332 ELLGERVVVEPARGIDRSADR 394
+ G+RV VE A+G R R
Sbjct: 92 YICGQRVRVELAKGPSRGRPR 112
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
+++YVG L +LE+ F+ FGR+ + + G+ FVE+EDYRDA++AV EL+G
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGA 63
Query: 332 ELLGERVVVEPAR---GIDRSADRYR 400
+ + VE + G DR R R
Sbjct: 64 NVCDRTIRVEFSNNRGGRDRGGGRPR 89
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 48.0 bits (109), Expect = 7e-06
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
S VYVG LP+ + DL K F+ +G++ + I G F+ F D + A +AV
Sbjct: 10 STVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVA 69
Query: 317 ELNGKELLGERVVVEPARGIDRSADRYRRGD 409
+N K++ G + A+ R+ + RR D
Sbjct: 70 AVNKKQMFGRTIKCTIAKDNGRAPEFIRRRD 100
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 47.6 bits (108), Expect = 9e-06
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 10/182 (5%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFF--KGFGRIRDILIKNG----YGFVEFEDYRDADDAVYELNG 328
V++G L F E L FF KG ++ + G +G+ +F D + A+ ELNG
Sbjct: 182 VFLGNLSFDADEETLAAFFEEKGLSATCRVITQEGRSRGFGYADFTSKEDYNKAL-ELNG 240
Query: 329 KELLGERVVVEPARGIDR--SADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
++ G + + PA + R G R PP + LIV NLS
Sbjct: 241 EDCCGREIRINPANSKPSRGGGNTPRGGGRGRGGRGGFSGGRDQNPPNSS---LIVRNLS 297
Query: 503 SRISWQDLKDYMRQAG--EVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRV 676
+ L +V + + R G V++ + + ++ G E++GR+V
Sbjct: 298 YDTTTDSLGAAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQV 357
Query: 677 RL 682
RL
Sbjct: 358 RL 359
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 47.2 bits (107), Expect = 1e-05
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFG-RIRDILI---------------KNGYGFVEFEDY 292
++VY G LPF + + +L+ F+ + D+LI G+GFV F +
Sbjct: 50 NKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANP 109
Query: 293 RDADDAVYELNGKELLGERVVVEP--ARGIDRSADRYRRGDR 412
DA AV LNGKE+ G + + P +RG D YR G R
Sbjct: 110 EDAQTAVKSLNGKEVQGRTLKIAPSISRGRDGGGGGYRGGYR 151
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Frame = +2
Query: 155 VGSRVYVGGLPFG-VRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGK 331
V R+++G L + +DLE+ F G++ + +GFV+FE + AD+AV + +G+
Sbjct: 44 VRCRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEKGADEAVAKEHGR 103
Query: 332 ELLGERV---VVEPARGIDRSADRYRRG---DRH 415
+ G+++ +V ++ +R RR DRH
Sbjct: 104 IINGKKIDVRIVNSRADVNLVGERKRRSGPPDRH 137
Score = 35.1 bits (77), Expect = 0.054
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 461 PTRTEYRLIVENLSS-RISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAI 637
P R+ + NL++ +I+ QDL++ + G+V H N G V+F T A+
Sbjct: 41 PHSVRCRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHA---NFGFVQFETEKGADEAV 97
Query: 638 EKLDGTELNGRRV 676
K G +NG+++
Sbjct: 98 AKEHGRIINGKKI 110
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
+R+YVG L F + E ++ F+ FG + + + GYGFV+F + A A+
Sbjct: 242 TRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAME 301
Query: 317 ELNGKELLGERVVVEP 364
++NG EL G + + P
Sbjct: 302 QMNGFELAGRPLKIGP 317
Score = 35.9 bits (79), Expect = 0.031
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
V+ L +R RDLE+FF G++ D+ I G ++EF D + A L
Sbjct: 148 VFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTD-KSAVPLAIGL 206
Query: 323 NGKELLGERVVV 358
+G++LLG ++V
Sbjct: 207 SGQKLLGAPIMV 218
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 44.0 bits (99), Expect = 1e-04
Identities = 32/82 (39%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Frame = +2
Query: 152 MVGSRV-YVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDAD 304
M RV YVGGL V E+ L F FG I D+ I G+GFVEFE D
Sbjct: 1 MANKRVAYVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTA 60
Query: 305 DAVYELNGKELLGERVVVEPAR 370
A+ +N EL G + V A+
Sbjct: 61 AAIDNMNESELFGRTIRVNLAK 82
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 578 QHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
+HR G VEF D AAI+ ++ +EL GR +R+
Sbjct: 44 KHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRV 78
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI------RDILIK-NGYGFVEFEDYRDADDAVYE 319
+ +Y+ GLP ++E ++E FK FG+I +D+ + G GFV F+ +A A+ +
Sbjct: 113 ANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDD 172
Query: 320 LNGKELLGERV 352
LN K L G V
Sbjct: 173 LNNKTLPGTNV 183
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNG 328
++V GLP L K F +G I +I +K GYGFV +Y +A A+ LNG
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNMSNYEEACHAICCLNG 329
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVY 316
+ + + +P + + D++K F G + LI++ GY FV +++ DA+ AV
Sbjct: 27 TNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVR 86
Query: 317 ELNGKELLGERVVVEPAR 370
E+NG L + + V AR
Sbjct: 87 EMNGARLQNKTLKVSFAR 104
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI----------KNGYGFVEFEDYRDADDA 310
SR+ + L F E L++ F FG + + + K G+GFV+F + DA A
Sbjct: 247 SRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKA 306
Query: 311 VYELNGKELLGERVVVE 361
+ E+N K++LG V V+
Sbjct: 307 LEEMNAKKILGRPVAVD 323
Score = 39.1 bits (87), Expect = 0.003
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRI-RDILIKNGY----GFVEFEDYRDADDAVYEL 322
G V + GLP + E+ + K + G + + I G+ + F+ Y+DA AV +L
Sbjct: 159 GRTVILSGLPASITEKQIYKRCRKLGEVEKTIFPVAGHDSPTASLLFKSYKDARQAVAKL 218
Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
NGK L G +V + + S D+ P + RLI+ NL+
Sbjct: 219 NGKTLKGVKV-----KAVIESKDK------------------SSSPKGSKKSRLIIRNLA 255
Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQ---HRNE----GVVEFATHSDMRAAIEKLDGTEL 661
+ LK+ GEV+ A ++ RN G V+F D A+E+++ ++
Sbjct: 256 FNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNAKKI 315
Query: 662 NGRRV 676
GR V
Sbjct: 316 LGRPV 320
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Frame = +2
Query: 146 WKMV-GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRD 298
W V G ++V + +E D+ + F +G I+++ + GY VE+E +++
Sbjct: 287 WHPVEGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKE 346
Query: 299 ADDAVYELNGKELLGERVVVE 361
A A+ LNG E+LG+ + V+
Sbjct: 347 AQSALEALNGAEMLGQNISVD 367
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELN 325
++V LPF +E ++E+ F G ++ + L+ N GYG+VE+E A AV L+
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 326 GKELLGERVVV 358
E+ G + V
Sbjct: 233 KTEVKGRTISV 243
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
++++GGLP + E +++ FG +R L+K+ GY F E+ D D A+
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQG 733
Query: 320 LNGKELLGERVVVEPA 367
LNG +L ++++V+ A
Sbjct: 734 LNGMQLGDKKLIVQRA 749
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFF 223
R+YVG +PFGV E + +FF
Sbjct: 564 RLYVGNIPFGVTENLMIEFF 583
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYEL 322
V+VG +P+ E L++ F G + R+ GYGF E++D A A+ L
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 323 NGKELLGERVVVEPA 367
NG EL G + V+ A
Sbjct: 87 NGYELNGRALRVDSA 101
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHSDMRAAIEKLD 649
+ V NL +++WQ LKD + AG V A D K+ + G V+F T + A+ L
Sbjct: 187 VFVTNLDYKVNWQKLKDTFKCAGHVIRAEIMEDDEKKSKGMGTVQFETPMEAMNAVNLLH 246
Query: 650 GTELNGRRVRL 682
G L R +R+
Sbjct: 247 GKMLMDRALRV 257
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 473 EYRLIVENLSSRISWQDLKDYMRQ-AGEVTYADAHKQHR 586
E ++ V N+ WQ+LKD+M + G+V +A+ + +
Sbjct: 92 EKKVFVSNIPFESRWQNLKDHMNKVVGDVAFAEIFEDEK 130
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKNGYGFVEFEDYRDADDAVYEL 322
+ Y+G L F V E DL+ F + + R+ G+ FV F ++ +DA+ EL
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINEL 290
Query: 323 NGKELLGERVVVEPAR 370
+G+E G + V AR
Sbjct: 291 DGQEFDGRSMKVNQAR 306
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +2
Query: 473 EYRLIVENLSSRISWQDLKDYMRQAGEV---TYADAHKQH-RNEGVVEFATHSDMRAAIE 640
E + + NL +++ DL+D + V +D Q R V F + +M AI
Sbjct: 229 ECKCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAIN 288
Query: 641 KLDGTELNGRRVRL 682
+LDG E +GR +++
Sbjct: 289 ELDGQEFDGRSMKV 302
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 584 RNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
R G V F + +M AI+K DG +L+GR +++
Sbjct: 50 RGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKV 82
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
V++G LPF + E L + F G + + LI++ G+G+V FE +DA ++
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFES-KDAVVFALKM 116
Query: 323 NGKELLGERVVVEPAR 370
N E G ++ V P++
Sbjct: 117 NNAEFKGRKIRVFPSK 132
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVY 316
+R+Y+ + + E D++ F+ FG++ + GYGF+E+E+ + A+DA+
Sbjct: 199 ARIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIA 258
Query: 317 ELNGKELLGE 346
+N +L G+
Sbjct: 259 SMNLFDLGGQ 268
Score = 37.9 bits (84), Expect = 0.008
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 13/186 (6%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYE 319
RVYVG + F +RE + F FG I I + G+ FVE++ A A+ +
Sbjct: 103 RVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQ 162
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
+NG L G + V + ++A + ++ + R+ + ++
Sbjct: 163 MNGVLLGGRNIKVGRPSNVPQAAPLIEQFEQE----------------AKKYARIYIASV 206
Query: 500 SSRISWQDLKDYMRQAGEVTYADAHKQ-----HRNEGVVEFATHSDMRAAIEKLDGTELN 664
+ D+K G+V + K+ H+ G +E+ AI ++ +L
Sbjct: 207 HPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLG 266
Query: 665 GRRVRL 682
G+ +R+
Sbjct: 267 GQFLRV 272
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRR 403
GY F+E+E RD A +GK++ G R+VV+ RG + R RR
Sbjct: 48 GYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDVERGRTVKSWRPRR 94
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 37.5 bits (83), Expect = 0.010
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-KN-GYGFVEFEDYRDADDAVYELNGK 331
G V+V G+ G+ E L++ F G + + KN GFV F+ + AD A+ E+NG
Sbjct: 109 GKTVFVSGI--GLTEEILKEEFNHLGHVERVNFEKNRSQGFVTFDTWEAADKAIDEMNGL 166
Query: 332 ELLGERVVVEPARGIDRSADRYRRGDR 412
++ + V AR + + +G R
Sbjct: 167 KVQHVHIRVSMARRQPNMDEMHGQGGR 193
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERV 352
G+GFV FE +A++AV LNGKE+ G R+
Sbjct: 150 GFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
Score = 31.5 bits (68), Expect = 0.66
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVY 316
G +Y+ L + + L + F +G I + G+GFV F +A AV
Sbjct: 211 GVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVT 270
Query: 317 ELNGKELLGERVVVEPAR 370
E+NG+ L+ + + V A+
Sbjct: 271 EMNGRILISKPLYVALAQ 288
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 36.3 bits (80), Expect = 0.023
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Frame = +2
Query: 146 WKMVGS-RVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KNGY----GFVEFEDYRDA 301
+KM S V++GGL V E L + F FG ++D++I ++G GFV F A
Sbjct: 518 FKMAASFPVWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVA 577
Query: 302 DDAVYELNGKELLGERVVVEPARGI 376
+ A +NG ++LG+ V + A+ +
Sbjct: 578 EAANVGMNGCDILGKIVETKYAKEV 602
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 35.9 bits (79), Expect = 0.031
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI--------LIKNGYGFVEFEDYRDADDAVYEL 322
+YVGGL V E + + F G + ++ + GYGFVEF DAD A+ +
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVM 74
Query: 323 NGKELLGERVVVEPARGIDRSAD 391
N ++ G+ + V A +++ D
Sbjct: 75 NMIKVYGKPIRVNKASAHNKNLD 97
Score = 33.5 bits (73), Expect = 0.16
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKN--GYGFVEFEDYRDADD 307
VG+ +++G L V E+ L F FG I RD N G+ F+ F + +D
Sbjct: 98 VGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDA 157
Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRY 397
A+ +NG+ L + V A + +R+
Sbjct: 158 AIEAMNGQYLCNRPITVSYAFKKESKGERH 187
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 35.9 bits (79), Expect = 0.031
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 346
VY+ L + E L++ + +G + + Y FV F + A A+ E +GKE+ G
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVHFTERDHALKAIEETDGKEMDGL 390
Query: 347 RVVVEPARGIDRSADRYR 400
++ A+ + DR R
Sbjct: 391 KIEASLAKPQPGNKDRQR 408
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 346
+YV +P + E L+ F +G+I + YGFV F A A+ +NG + G
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKRESAVQAIDGINGAYIDGC 63
Query: 347 RVVVEPA 367
++ V A
Sbjct: 64 KLEVSLA 70
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKELL 340
++VGG+ + E+ +E+ F +GR+ ++I V F+ A A ++ G+ +
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKVVINRVTNQALVSFDSVDSATIAHAQMKGRTMF 389
Query: 341 GERVVVE 361
RV VE
Sbjct: 390 SRRVRVE 396
Score = 34.7 bits (76), Expect = 0.071
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI---KNGYG----FVEFEDYRDADDA 310
++VG LP +RE D+ K F +GR+ + I ++ G FV+F D R A A
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDFVDIRSATKA 62
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE--GVVEFATHSDMRAAIEKLDGT 655
L V N+ ++ DLK+ + GEV D KQ N V+FA S A K+D
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRKMDRE 310
Query: 656 ELNGRRVRL 682
+ RV++
Sbjct: 311 YVGRNRVKV 319
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 35.1 bits (77), Expect = 0.054
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 8/47 (17%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRD-ILIKN-------GYGFV 277
++++VGG+P+ + L KFF FG IR+ ++IK+ GYGFV
Sbjct: 10 TKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFV 56
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 35.1 bits (77), Expect = 0.054
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Frame = +2
Query: 173 VGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYELNG 328
V L + DL++ FK +G + DI I G+ FV F + RDA+DA+ ++
Sbjct: 20 VDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDA 79
Query: 329 KELLGERVV 355
L+ E+ V
Sbjct: 80 TCLMAEKFV 88
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 176 GGLPFGVRERDLEKFFKGFGRIRDILI--KNGYGFVEFEDYRDADDAVYELNGKEL 337
GGL GV + + F +G + +++ + Y FV ++ + +A +A+ LNGK L
Sbjct: 55 GGLMCGVDRESITRVFSLYGTLERVVMLPQRSYSFVSYKSHNNALNAMRNLNGKAL 110
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEF 283
+Y+G +P G E +++KFF+ FG + I + GY FVEF
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEF 146
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 34.3 bits (75), Expect = 0.094
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAV---Y 316
V+VGGL G E L+ +F+ FG + + I YGFV F+D + + + +
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFVLFKDDGPSKEVLKKSH 141
Query: 317 ELNGK 331
+NGK
Sbjct: 142 VINGK 146
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI 250
+YVGGLP E+ + + FK FG I +
Sbjct: 159 IYVGGLPSHFTEQTVREHFKKFGVIEAV 186
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYR------- 295
++++VGGL L ++F+ +G + D+++ G+G+V F DY+
Sbjct: 14 AKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLK 73
Query: 296 -DADDAVYELNGKELLGERVV 355
++ + ++GKE+ +R +
Sbjct: 74 DKVENGAHRIDGKEVEVKRAI 94
>SB_25641| Best HMM Match : VWA (HMM E-Value=1.4e-37)
Length = 279
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 506 RISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVR 679
R SW+++K++++ V D Q + G++ F+T + A +K G E+N ++
Sbjct: 103 RRSWEEIKNFVKSI--VDMCDISDQGTHVGIITFSTDPVIDIAFDKYKGVEMNAVNIK 158
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 33.5 bits (73), Expect = 0.16
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRI 241
+V++GGL FG E DL+++F +G +
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMV 228
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAV 313
GS +++ LP + DL + F+ FG + + + +GFV +++ A +A+
Sbjct: 276 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAI 335
Query: 314 YELNGKELLGERVVVEPARGID 379
+NG ++ +R+ V+ R D
Sbjct: 336 QHMNGFQIGAKRLKVQLKRPKD 357
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK---NGYGFVEFEDYRDADDAVYE 319
V +++VG LP E+ L ++F FG + D+ I +GFV F + +E
Sbjct: 197 VPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTFASVANCVSIAFE 254
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +2
Query: 179 GLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAV 313
GLP+ E +++++F FG I +K G+GFV F+ DA + +
Sbjct: 121 GLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVL 173
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/75 (20%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI--------LIKNGYGFVEFEDYRDADDAVY 316
+++YV L V + +++ F +GR++ + + G+ +VE+ D + + A+
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALK 1216
Query: 317 ELNGKELLGERVVVE 361
++G ++ G+ + V+
Sbjct: 1217 HMDGGQIDGQEIAVQ 1231
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +2
Query: 473 EYRLIVENLSSRISWQDLKDYMRQAGEV---TYADAHK-QHRNEGVVEFATHSDMRAAIE 640
EYR + NLS + Q L++ V D + R G V F + +M AI+
Sbjct: 4 EYRCYIGNLSYSVDEQALEEKFHGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAID 63
Query: 641 KLDGTELNGRRVRL 682
+ DG + +GR +++
Sbjct: 64 EFDGQDFDGRPMKV 77
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSAD 391
GY FVEF+ DA A+ LN K +L +VV+ A SAD
Sbjct: 432 GYCFVEFKKKEDARKALRGLNKKIVLSRALVVDWAHHHKSSAD 474
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 242 RDILIKNGYGFVEFEDYRDADDAVYEL-----NGKELLGERVVVEPARGIDRSADR 394
R+ +G+V F D +DA DA+ ++ GKE+ G + +E A+ + SA R
Sbjct: 11 RETRRSRNFGYVTFRDEQDAADAMKQMGGESGKGKEIFGRALNIEYAQEKESSAPR 66
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI 250
+V++G LP GV++ D+ + F +G I +I
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTILEI 386
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 23/88 (26%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN----------------------GYGF 274
R++V +PF R+ DL + F FG I D+ +I N G+GF
Sbjct: 69 RLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGF 128
Query: 275 VEFEDYRDADDAVYELNGKELLGERVVV 358
V F +A+ A +LNG + G +V V
Sbjct: 129 VTFNTAAEANKAREKLNGTIVDGRKVEV 156
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 593 GVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
G V F T ++ A EKL+GT ++GR+V +
Sbjct: 127 GFVTFNTAAEANKAREKLNGTIVDGRKVEV 156
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--KNGYGFVEFEDYRDADDAVYELNGKELL 340
+YVGGL V E+DL F FG +R I + + FV F A+ A K +L
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFVCFTSRAAAEAAADRSFNKLIL 365
Query: 341 -GERVVV 358
G R+ +
Sbjct: 366 KGRRLKI 372
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +2
Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAI 637
P R+ L V L +++ QDL+D+ Q GE+ + + +N V F + + AA
Sbjct: 298 PTDRSITTLYVGGLEGKVTEQDLRDHFYQFGELR-SISMVPRQNCAFVCFTSRAAAEAAA 356
Query: 638 EK-LDGTELNGRRVRLV 685
++ + L GRR++++
Sbjct: 357 DRSFNKLILKGRRLKIM 373
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRI 241
++++GGL E D++K+F FG++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGID 379
G+GFV + D + LN +L +R+ +EPARG D
Sbjct: 51 GFGFVNVPKH--LADHLMHLNQTKLFDKRITIEPARGKD 87
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 584 RNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
R G V F + +M AI++ DG +L+GR +++
Sbjct: 137 RGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKV 169
>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKG 229
S +Y+GGLP GV ++FF+G
Sbjct: 796 SPLYIGGLPEGVMPNQTQRFFRG 818
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDAD 304
K+ + +Y+ GL + DL + +G I +D + GYGFV+FE A
Sbjct: 96 KLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQ 155
Query: 305 DAVYELNGK 331
AV L K
Sbjct: 156 KAVAALVNK 164
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN 262
V+VG LP ++++ L+K+F +G + + ++
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESVRFRS 54
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYG-------FVEFEDYRDADDAVYELN 325
V++GGLP + E + + F G I I I G G + F D AV +
Sbjct: 353 VFIGGLPESINEHIINEIFYVCGEITSIRISKGKGENARKFCHLRFGAKESVDTAVL-FS 411
Query: 326 GKELL--GERVVVEPAR-GIDRSADR 394
G L GE + +E +R +D +A R
Sbjct: 412 GYRLYTRGENMAIESSRIFVDYAASR 437
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +2
Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA---DAHKQHRNE----GVVEFATH 616
PP + + EN ++S +++ YMR+ E +A D QH +E V E+ H
Sbjct: 216 PPHSDMFSHMDENGDRKLSREEVSAYMRKQAEAQFAPTYDQRWQHHHERMVDNVFEYEDH 275
Query: 617 -SDMRAAIEKLDGTELNG 667
D + E+ G ++ G
Sbjct: 276 DEDGHISHEEFSGPKIQG 293
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
S ++VG LPF E +G I + + GYGFVE+ +A A
Sbjct: 113 SLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQ 172
Query: 317 EL--NGKELLGERVV 355
+L + +G R++
Sbjct: 173 QLLNTASKYIGGRIL 187
>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
Length = 1851
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEV 556
P ++++ I + + SR++W + K+ ++ AGEV
Sbjct: 1331 PEVQSDHEHIGKPVESRVAWDEKKEVLQSAGEV 1363
>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 201 RETWKSSSKVLEESETYLS-RMDMVLLNLKITEMQMMLCTS 320
R+ WKS L+ES+ D + +NL ITE +L S
Sbjct: 1237 RDNWKSIQVYLDESKKGEDISFDQLFMNLNITEQNYLLAVS 1277
>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 943
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 201 RETWKSSSKVLEESETYLS-RMDMVLLNLKITEMQMMLCTS 320
R+ WKS L+ES+ D + +NL ITE +L S
Sbjct: 718 RDNWKSIQVYLDESKKGEDISFDQLFMNLNITEQNYLLAVS 758
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +2
Query: 179 GLPFGVRERDLEKFFKGFG-RIRDILI-------KNGYGFVEFEDYRDADDAVYELNGKE 334
GLPF RD++ FF G R +DI + +G F F DA A+Y GK
Sbjct: 9 GLPFEATSRDIQMFFDGLSLREKDIHLAANKDGKASGISFAVFNVDDDARKAMYR-TGK- 66
Query: 335 LLGERVV 355
+G+R +
Sbjct: 67 YMGKRYI 73
>SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 286 FKFNKTISILDKYVSDSSKTFEELFQVSLSYSKGETTN 173
F + I ++DK+ + S +E L+Q+ L+ K E N
Sbjct: 332 FILQQIIDLVDKHPEEDSVNYELLYQIYLAIFKAEPVN 369
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEK----FFKGFGRIRDI-----LIKNGYGFVEFEDYRDADDAVYE 319
+Y+ L +++ +L+K F FG I DI L G FV F+D A +A+
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRS 68
Query: 320 LNGKELLGERVVVEPARG 373
+ G + + ++ A+G
Sbjct: 69 MQGFPFYDKPMRIQYAKG 86
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEG-----VVEFATHSDMRAAIEKL 646
L V NLSS DLK Q G+V A + G +V T + I+ L
Sbjct: 351 LWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMTTSEEAAKCIQHL 410
Query: 647 DGTELNGRRV 676
TEL+GR +
Sbjct: 411 HRTELHGRAI 420
>SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)
Length = 376
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVV 355
GYG VE YRD + YE E++G RVV
Sbjct: 253 GYGVVEMMGYRDVEMMGYE--DVEMMGYRVV 281
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,856,620
Number of Sequences: 59808
Number of extensions: 349613
Number of successful extensions: 3258
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 3074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3240
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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