Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a09
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   30   1.8  
SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_37606| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_51134| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-09)          27   9.7  

>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 472 PVSGQLKKFVFRARSSTNGDTRGEYLEIVIPELLSAGYSFYTWPSAPLLAWY 627
           P  G L+   F  R++ N D  G+Y +  +P      +S Y W    L A Y
Sbjct: 249 PEFGSLEVLPFFVRTANNKDAVGDYQDSYLPSPSCTEWSVYEWLGKILGALY 300


>SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 484 QLKKFVFRARSSTNGDTRGEYLEIVIPELLSAGYS 588
           +L+K   R  SS N + +GEY EI+  + +S+ ++
Sbjct: 326 KLRKKTLRESSSINEERKGEYFEIMSVDYMSSEHT 360


>SB_37606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 538 GEYLEIVIPELLSAGYSFYTW 600
           GEYL I++ E  S GY+  TW
Sbjct: 9   GEYLRILVTESQSIGYNRVTW 29


>SB_51134| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-09)
          Length = 382

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 180 FQKVHR--KSFNKKPTTLLS 233
           FQ+VHR  +SFN KP TLL+
Sbjct: 319 FQRVHRMGRSFNGKPRTLLA 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,023,037
Number of Sequences: 59808
Number of extensions: 330292
Number of successful extensions: 587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)