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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a06
         (474 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          181   3e-46
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         30   1.1  
SB_10243| Best HMM Match : Ank (HMM E-Value=0)                         30   1.1  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   3.4  
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          27   6.0  
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)                   27   7.9  
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)               27   7.9  
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)                    27   7.9  
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)                    27   7.9  
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)                 27   7.9  
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)                    27   7.9  
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)                    27   7.9  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  181 bits (440), Expect = 3e-46
 Identities = 84/106 (79%), Positives = 96/106 (90%)
 Frame = +2

Query: 35  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 214
           RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++A
Sbjct: 23  RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLA 82

Query: 215 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 352
           TVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N  V V  +
Sbjct: 83  TVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 83   LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 175
            L +GA ++CADN G   L  +A QG    +N
Sbjct: 913  LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943


>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
          Length = 475

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 83  LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 175
           L +GA ++CADN G   L  +A QG    +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 367  ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 236
            A  FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 180 SLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRP 37
           SLF++     T  T    AP L    + APT  P   ++ AP  PP P
Sbjct: 67  SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114


>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 358 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 236
           FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 2   FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42


>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 166 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 68
           T   + + +I   CP VVG V+ CS W     T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 390 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 250
           AT  V A    + L  T+ PAL++K+IN  +R  N  + L+    +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232


>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 346

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 135 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 34
           R + P L   +  AP+G P +  + APA P PRPL
Sbjct: 283 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 316


>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
          Length = 192

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 367 ALHFALVIDYDTRIVLKVYK-YSITPSE 287
           AL FAL + YDT+I++   K YSI+P E
Sbjct: 137 ALLFALYLVYDTQIMMGGGKMYSISPEE 164


>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
          Length = 347

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 135 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 34
           R + P L   +  AP+G P +  + APA P PRPL
Sbjct: 287 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 320


>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 1026

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 135  RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 34
            R + P L   +  AP+G P +  + APA P PRPL
Sbjct: 963  RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 996


>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
          Length = 1155

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 135  RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 34
            R + P L   +  AP+G P +  + APA P PRPL
Sbjct: 1092 RAYTPALPT-IPMAPSGAPAKTPSVAPAAPSPRPL 1125


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 76  PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFWGHDCG 213
           P   S SS+  R +H+GK S         RSP  T G     HD G
Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSHS-NHDAG 151


>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
          Length = 1225

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 213 ATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 94
           AT  S + A+ SL      PW+  T+R   P +SA+  TA
Sbjct: 816 ATSRSGDSASRSLTNLGCYPWSKQTFRHEGPPISARPCTA 855


>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
          Length = 865

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 135 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 34
           R + P L   +  AP+G P +  + APA P PRPL
Sbjct: 805 RAYTPALPT-IPQAPSGAPAKTLSVAPAAPSPRPL 838


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,957,155
Number of Sequences: 59808
Number of extensions: 353649
Number of successful extensions: 923
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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