Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b03
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   5e-10
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   2.6  
SB_18890| Best HMM Match : OCIA (HMM E-Value=6.3)                      29   3.4  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)                  28   6.0  

>SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
 Frame = +1

Query: 418 RNILMSSLENASFNILIQILFRCITFIINAWVIRNVGHEILGIMNVRXXXXXXXXXXXSR 597
           ++I+ S++ +AS+N+ +Q+ FR +TF +N  ++R +  ++LG++NVR           SR
Sbjct: 4   KSIVGSTVRSASYNVALQVTFRILTFFMNGILMRFISRDMLGVVNVRLVLLQQTITFVSR 63

Query: 598 EPFNRACLGRTDGFG---WSHLINQIW 669
           E F ++CL ++       W  +IN +W
Sbjct: 64  EAFRKSCLTKSASGSEQHWPQVINLLW 90


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/77 (24%), Positives = 30/77 (38%)
 Frame = +2

Query: 122  IGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKISITFDDH 301
            IG+L        +   G  +    +AT ++ L  +SN    +A     N+   S +FD H
Sbjct: 1713 IGFLFDGTKDVDMSYNGNFQQSLSLATTLSQLFDISNASARIAVAVYSNYTDSSFSFDSH 1772

Query: 302  WYIICLSNKKIYVVKRN 352
                 L N    +V  N
Sbjct: 1773 LTHASLRNAVEKIVYPN 1789


>SB_18890| Best HMM Match : OCIA (HMM E-Value=6.3)
          Length = 310

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +2

Query: 140 TEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKISITFDDHWYIICL 319
           T DG  ++  G L+ DE+++++    + +  + D V    S+N    ++T D    ++  
Sbjct: 141 TTDGVSIQYTGYLKKDEKLSSVDEPQLVIGGKYDRV----SKNDNLANLTTDAG--VVHT 194

Query: 320 SNKKIYVVKRNIHTPLRESNE 382
            N  +     + HTPL  SN+
Sbjct: 195 PNNGVDRELSSDHTPLMSSND 215


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +2

Query: 122  IGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKISITFDDH 301
            IG+L        +   G  +    +AT ++ L  +SN    +A     N+   S +FD H
Sbjct: 3439 IGFLFDGTKDVDMSYKGNFQQSLSLATTLSQLFDISNASARIAVAVYSNYTDSSFSFDSH 3498


>SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)
          Length = 492

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 448 ASFNILIQILFRCITFIINAWVIRNVGHEILGIMN 552
           +S+ +    L++C    +N WV RNV   I+G+++
Sbjct: 412 SSYYLKTIFLWKCERMPMNVWVERNVAQVIMGLLD 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,045,298
Number of Sequences: 59808
Number of extensions: 321500
Number of successful extensions: 798
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)