Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b02
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12290| Best HMM Match : MFS_1 (HMM E-Value=9.6e-16)                 84   9e-17
SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   8e-11
SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)                 59   3e-09
SB_17852| Best HMM Match : MFS_1 (HMM E-Value=0.00068)                 58   7e-09
SB_51537| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06
SB_31394| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_56877| Best HMM Match : Ion_trans_2 (HMM E-Value=3.1e-11)           31   0.70 
SB_26687| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)             29   4.9  
SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)                 28   6.5  
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_7362| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)                  28   8.6  
SB_5148| Best HMM Match : RVT_1 (HMM E-Value=1.7e-27)                  28   8.6  
SB_43984| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)                         28   8.6  

>SB_12290| Best HMM Match : MFS_1 (HMM E-Value=9.6e-16)
          Length = 432

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 39/122 (31%), Positives = 64/122 (52%)
 Frame = +3

Query: 303 YNWNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFS 482
           +NW+ + Q ++L +FF GY  + IP   +A + GG       +FV  ++++++P    +S
Sbjct: 161 FNWDSALQGLVLGSFFYGYWVLQIPGAWLAMRIGGTRVFGYGVFVTSLLALLTPVATRYS 220

Query: 483 GWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTILIFEISGL 662
            W GL   R+ QG+     +P  H +  KWAP  ER  L T    G  FG I+   ++GL
Sbjct: 221 VW-GLVGVRIFQGLFLGVTFPCNHAIWSKWAPPFERSTLITISIAGCPFGNIVAIPLTGL 279

Query: 663 FA 668
            +
Sbjct: 280 LS 281


>SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
 Frame = +3

Query: 309 WNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIP----- 473
           W+K     ++ AFF GYT   I  G ++ K+GG+  +  A  +    ++  P++P     
Sbjct: 56  WDKEADGAVMSAFFWGYTPAQIVGGYLSDKYGGEVVLGYAAIIWSFCTLAVPFLPGKAFL 115

Query: 474 LFSGWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTILIFEI 653
            F   + +   R++ G++Q   YPS+  ++ K  PL ER  L++ V++    GT+++  +
Sbjct: 116 FFPPIVMVILSRVVTGLSQGLHYPSLTNIIAKRIPLKERTLLTSSVFSAGPVGTLVMGSV 175

Query: 654 SGLFAGTPVLGWXRYIL 704
             +       GW    L
Sbjct: 176 GSVI--LMYFGWPSVFL 190


>SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)
          Length = 349

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
 Frame = +3

Query: 78  PKIPAPKGFGTRHTQALVLFICLTVAYTMRAQLSVSMVAITGHAVTESELCSNVSTSE-N 254
           PK    + F  R+   L+ F      Y MRA LSV++VA+       S   + V   E  
Sbjct: 23  PKSLCNRLFCCRNVLVLMQFAGFVTVYGMRANLSVALVAMVNQTYANSASGTRVYVPECR 82

Query: 255 TSCVTEEISAWSVYRTYNWNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALF 434
                  +        + W++ TQ ++L AFF GY    +P G +A  +GGK    + +F
Sbjct: 83  LDGGNHTVDHTLEDGPFKWDQDTQGLVLGAFFYGYLVTQLPGGWLAGHYGGKSVFGLGVF 142

Query: 435 VNGVVSIISP 464
              + ++++P
Sbjct: 143 FTAIFTLLTP 152


>SB_17852| Best HMM Match : MFS_1 (HMM E-Value=0.00068)
          Length = 256

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
 Frame = +3

Query: 309 WNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIP---LF 479
           WNK    ++L +FF GY    IP G ++  +G +  +  A+    + +++ P +    + 
Sbjct: 68  WNKRESGLVLSSFFWGYLITQIPGGFLSDVYGAERLLLWAVTGCSLSTLVIPLVASQKVT 127

Query: 480 SGWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTILIFEISG 659
           S    +   RL  G+ Q   YPS++++L K  P+SER   S +   G   G+++I  +  
Sbjct: 128 SPITLVLISRLALGVFQGIYYPSLYSLLAKSLPISERSSCSAFALAGGPVGSLVIGGLGS 187

Query: 660 L 662
           L
Sbjct: 188 L 188


>SB_51537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/92 (27%), Positives = 47/92 (51%)
 Frame = +3

Query: 330 MILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCR 509
           ++L +F+ GY  + IP G    K GGK      + V  V+++++P I +   ++     R
Sbjct: 2   LVLGSFYYGYAVLQIPAGWAVLKIGGKPIFGFGILVASVLALVTPPI-VKQSFIVFICLR 60

Query: 510 LIQGMTQAALYPSMHTMLGKWAPLSERGRLST 605
           + QG++   +  + H +   W+P+ ER  L T
Sbjct: 61  IAQGLSLGLIASAHHCIWATWSPIFERASLLT 92


>SB_31394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 330 MILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCR 509
           +IL +F+ GY    IP G +A K GG       +F    +++ +P     S  + L   R
Sbjct: 2   IILGSFYYGYMVFQIPGGWLAMKLGGAKLFGFGIFSASFLTLFTPLAARCSP-IALIILR 60

Query: 510 LIQGM 524
           +++G+
Sbjct: 61  VLEGL 65


>SB_56877| Best HMM Match : Ion_trans_2 (HMM E-Value=3.1e-11)
          Length = 464

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +3

Query: 348 FVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGMT 527
           F G+    + M  +   +G K P SV   +  VV I +  + + + +MG+ T  L   M 
Sbjct: 98  FEGFWWAAVTMTTVG--YGDKVPRSVPSRLFAVVWI-NAGLVIIAMFMGIVTSSLSSNMI 154

Query: 528 QAA--LYPSMHTMLGKWAPLSERGRLSTYVY 614
             A  LY  +HT + + AP+  R   ST  Y
Sbjct: 155 GNASHLYGMVHTNIRRLAPVGPRRDASTVYY 185


>SB_26687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 CVTEEISAWSVYRTYNWNKSTQEMILFA 344
           C   EI+AW VY     N    E+ILF+
Sbjct: 410 CCVHEINAWMVYNGLKLNHDKSELILFS 437


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 213 TESELCSN--VSTSENTSCVTEEISAWSVYRTYNWNKSTQEMILFAFFVGYTTMMIPMGI 386
           T  + CS   +S  ENT CV   +      +   W  ST  ++LF   VG+   +I  G+
Sbjct: 534 TSCKKCSKEQMSNKENTKCVDLPL------QNIQWEDSTATVVLFLTAVGFLLTIIVFGV 587


>SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
          Length = 279

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 24/86 (27%), Positives = 39/86 (45%)
 Frame = +3

Query: 24  EKAVYKGVPADDKYEGSSPKIPAPKGFGTRHTQALVLFICLTVAYTMRAQLSVSMVAITG 203
           EKA +K +PA+  +E +  K+PA +      T +L+         TMR   + S++  T 
Sbjct: 3   EKAQHK-LPANYDFEKAQHKLPANRTLRKYKTSSLL-------TRTMRKHNTSSLLTRTS 54

Query: 204 HAVTESELCSNVSTSENTSCVTEEIS 281
               +S L +  S   NTS +    S
Sbjct: 55  RKYNKSSLLTRTSRKYNTSSLLTRTS 80


>SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)
          Length = 467

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 150 VAYTMRAQLSVSMVAITGHAVTESELCSNVSTSENTSCVTEEISAWSVYRTYNWNKSTQE 329
           + Y + A  S   V+  G++  + EL   +       C   EI+AW V+     N    E
Sbjct: 179 ILYHLYADDSQLYVSFRGNS--QDEL---LKAKTKVECCVHEINAWMVHNGLKLNHDKSE 233

Query: 330 MILFA 344
           +ILF+
Sbjct: 234 LILFS 238


>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 18  PGEKAVYKGVPADDKYEGSSPKIPAPKGFGTRHTQALVLFI 140
           PG   V +  P   + EGSSP+  +P+ +G+ H +    ++
Sbjct: 859 PGGSGV-EATPVGGRVEGSSPQTQSPQVYGSLHEECAWFYL 898


>SB_7362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 578

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 CVTEEISAWSVYRTYNWNKSTQEMILFA 344
           C   EI+AW V+     N    E+ILF+
Sbjct: 427 CCVHEINAWMVHNGLKLNHDKSELILFS 454


>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
          Length = 1417

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 374  PDGYNSAEIR-WKISDQCGAIR 436
            PDGYN   IR W   D CGA R
Sbjct: 1243 PDGYNPGVIRYWINDDDCGADR 1264


>SB_5148| Best HMM Match : RVT_1 (HMM E-Value=1.7e-27)
          Length = 286

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 CVTEEISAWSVYRTYNWNKSTQEMILFA 344
           C   EI+AW V+     N    E+ILF+
Sbjct: 215 CCVHEINAWMVHNGLKLNHDKSELILFS 242


>SB_43984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 372 IPMGIIAQKFGGKFPISVALFVNGVVSIISP 464
           +P G++AQ+FGG+  +   +  + +   +SP
Sbjct: 5   VPGGMLAQRFGGRVVLGSCMLFSSIFVFLSP 35


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 CVTEEISAWSVYRTYNWNKSTQEMILFA 344
           C   EI+AW V+     N    E+ILF+
Sbjct: 824 CCVHEINAWMVHNGLKLNHDKSELILFS 851


>SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)
          Length = 1329

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 523 IP*INRHVARPIHPLNKGIQGLMIETTPLTNSATLIGNFPPNF 395
           +P   + +A+P +P N GI  ++++T P  N+    G    NF
Sbjct: 668 VPGQGQPIAQPYNPPNSGITPMVMDTDPGYNTGAQYGYNSGNF 710


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,132,233
Number of Sequences: 59808
Number of extensions: 531301
Number of successful extensions: 1434
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)