Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0041
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32670| Best HMM Match : CIMR (HMM E-Value=0)                        29   4.7  
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_10692| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_32670| Best HMM Match : CIMR (HMM E-Value=0)
          Length = 1441

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 620 SSHKPFALDAF--TLSLLFGANASVATTKARTVGHCVDQSQNGYTTR 486
           S+   F L  F  T   LFG NA  +       G C D+SQ G T+R
Sbjct: 82  SADNGFNLGLFSKTTKELFGDNAGYSIEFTNKDGKCEDKSQGGVTSR 128


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 119 IHYLQESHLYFVAS--CRFSILTFYNSNKSIRSNKFLS*YINFMRCTL 256
           +HY   SH YF A+   R+S  T Y ++ +  S ++    +N+  CTL
Sbjct: 21  LHYNHNSHTYFTATHPARYSKTTRY-AHYNTHSARYAHYTLNYSYCTL 67


>SB_10692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 656 NAWSVRLKLDKPSSHKPFALDAFTLSLLFGANASVATTKARTVGHCVDQSQN 501
           N+W   LK  +PS  +  A  A   S L G +A V+  K     H ++ S+N
Sbjct: 22  NSWGTSLKAPRPSRAERLAPSASRPSSLPGRHALVSIKKWERGVHHLEDSEN 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,940
Number of Sequences: 59808
Number of extensions: 367274
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)