Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0036
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      30   2.1  
SB_31955| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 342 TYILTRSLFKLILCTTTYRLLQCFLFNVIFLGAFYHLRYCQHVSFISY 485
           T I  R   ++ +C     LL CFLF+V  +GA++H R   HV  + Y
Sbjct: 225 TTIELRIHIRISICAPFGTLL-CFLFDVHVMGAYFHQR-LSHVLLLIY 270


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 391 LTGCYNASSLMLYFLALFTIYVIANMCHLLVILFSLAFMHILFRLRLAII*YY*STFLSK 570
           L  CY   +L++     FT+ V+  +C +L+++  L F        L ++ Y   T L  
Sbjct: 129 LVMCYLCCTLLVMDYLCFTLLVMGYLCCILLVMGCLCF-------TLLVMGYLCCTLLVM 181

Query: 571 KYVICS*LVI 600
            Y+ CS LV+
Sbjct: 182 GYLCCSLLVM 191


>SB_31955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 438 AFYHLRYCQHVSFISYIVFTRIYAYTI*IKISYNLI-LLINFF 563
           A Y   Y +  S+I+Y   T  Y YTI +KI Y  +  LI+ F
Sbjct: 160 ADYMFHYGKVFSYINYYTNTAAYIYTILLKIVYITVPTLISLF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,039,235
Number of Sequences: 59808
Number of extensions: 344733
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)