Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0007
(665 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0) 56 3e-08
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0) 55 5e-08
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) 51 7e-07
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_41779| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17) 29 3.4
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1031
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +2
Query: 365 RFVQMQLIVQSRDY--YQEISR*IVMKAVGYLAVYRITFATCLFFLLMALIMIGVKSSKD 538
RF Q +L+ + Y QE+ R ++YR+ FA +F+ LMA ++IGV++ +D
Sbjct: 475 RFCQRRLVYKPEVYNRIQELER-------TCFSLYRVCFAMAMFYFLMAFVLIGVRNEED 527
Query: 539 PRAGIQNGFWAIKYLLV 589
RA NGFW IK LL+
Sbjct: 528 VRAKFHNGFWYIKILLL 544
>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 834
Score = 55.2 bits (127), Expect = 5e-08
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +2
Query: 446 GYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKY 580
GYLAVYRI F++L A+++ V++ DPRA IQNG W +K+
Sbjct: 394 GYLAVYRICLTMATFYILFAVVLYNVRTYADPRALIQNGLWVVKF 438
>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1457
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = +2
Query: 443 VGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIK 577
VGY A YRI FA +F+ L++++ V S+K RA I NGFW IK
Sbjct: 820 VGYSAAYRIYFAMTVFYFLLSILTYNVSSTKQFRARIHNGFWYIK 864
>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 443 VGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLL 586
VG++ +YRI F +FFL MA++ A ++NG W +K+ L
Sbjct: 65 VGHILLYRIYFGMFVFFLFMAVVNCQASFCMGYSALLENGLWFLKWNL 112
>SB_41779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +2
Query: 482 CLFFLLMALIMIGVKSSKDPRAGIQNG 562
C FFL M +I I V SSKD R GI NG
Sbjct: 3 CFFFLFM-IITIKVSSSKDCRGGIHNG 28
>SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = -2
Query: 283 YIRREEVELVQDGHAEQHSEQAVLPQQHASCAAE----QRPNTAPIS 155
Y R +VE + G QH QA PQQ A AA Q P+TAP++
Sbjct: 41 YTIRVDVEFLHVGQKLQHKLQAAEPQQQARFAAHEAAVQAPSTAPMA 87
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -2
Query: 352 VHYVIRELK*YSTQIVTSTSISAYIRREEVELVQDGHAEQHSEQA 218
+ V ++L+ ++T+I T S + I + EL+QDGHA + +A
Sbjct: 221 IQTVRQKLERFATEIATKCSRVSDINQLADELIQDGHAHSAAVKA 265
>SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)
Length = 259
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 313 QIVTSTSISAYIRREEVELVQDGHAEQHSEQAVLPQQHASCAAEQRPNT 167
+I S++ + E+ LV+DG+ +Q +E+ V + EQ+PN+
Sbjct: 137 EIAKHISLNELRKHEKYSLVEDGNGKQLAERRVELLEGKVATLEQKPNS 185
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = -2
Query: 619 DEECSDNATNNQ*IFDGPKTILNSSSWIFRRFDTNHN*RH*QKEETCCKCNSINSQISNR 440
D+ CS N ++N I + +I N++S I R NHN + C NSIN++ +N
Sbjct: 1707 DKNCSSNNSDNNSIINN-NSINNNNSSINNR-SNNHN-NNNNSINNCNNNNSINNRNNNN 1763
Query: 439 FHHN 428
+N
Sbjct: 1764 SINN 1767
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 16/71 (22%)
Frame = +1
Query: 292 CWCW*LFVCCIT-LAPGLHNELQKLPF-----CTNATDS-------TVTGLLP---GNFK 423
C W FV C + +A LH+ L K F C A +S +VT LP G F
Sbjct: 293 CTFWRRFVKCFSEVAAPLHDLLNKQDFYRSPECDQAFESLKHLLCTSVTLSLPSQHGRFA 352
Query: 424 VDCDESGWIFG 456
V CD S W G
Sbjct: 353 VTCDASNWAIG 363
>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 567 QKPF*IPALGSLEDLTPIIINAISRKKRHV 478
Q P P + SLE+L+P+ ++ I RKK+ V
Sbjct: 667 QPPSVRPRIQSLEELSPMAVDEIMRKKQSV 696
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,800,641
Number of Sequences: 59808
Number of extensions: 434468
Number of successful extensions: 942
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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