Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0004
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078)                  29   2.8  
SB_12761| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_16028| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)                 27   8.6  
SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078)
          Length = 360

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 338 LCLDGFEAWLKYKHRTACLERLSTYNGKKIILATKQLKDWFVNKW 472
           L +DG   WL + HR        + NG+K++  +    DW V+ W
Sbjct: 37  LMVDGPIVWLSFSHRYESRATTWSRNGRKLLSGS---NDWNVSVW 78


>SB_12761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 506 TKAFLLANIILGCIFFIGKYVNGYML 583
           T   +LANII+  + F+G Y+ GY +
Sbjct: 6   TALIILANIIIVAVIFVGGYLVGYFV 31


>SB_16028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 302 FIKFMICLCITLLCLDGFEAWLKYKHRTACLERLSTYNGKKIILATK 442
           F+ F+I LCI L C     A  + ++R    E  ST   +++  +TK
Sbjct: 133 FVDFIIPLCIILFCYFHIFAIARRQNRQINAENTSTDRSRQLAKSTK 179


>SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)
          Length = 363

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +2

Query: 302 FIKFMICLCITLLCLDGFEAWLKYK--HRTACLERLSTYNGKKIILATKQLKDWFVNKWC 475
           F+K++I   + ++CL     ++K+K  +R   L+ L     ++  +A   +   F++ +C
Sbjct: 160 FVKYLIACTLPVICLCYAAIFVKFKLQNRQHGLQALPQTQQRERNMAKTLVTATFLSYFC 219

Query: 476 ---EFIYIRQTNHTKAFLLANIILGCIFFIGKYVN 571
                ++I    +T+A+++  +   CI F    VN
Sbjct: 220 FVPTAVFINDFRNTEAYVV--LACYCIRFANSLVN 252


>SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 327 HRHIINFIKFIWWYTHTKNITLLIIINDTDSQICFHRIISSNKPIKAGN 181
           HRH   +  + + + HT  I ++I I  T +  C+      +K   AG+
Sbjct: 41  HRHHHYYHIYDYHHQHTNAIIIIITITGTTTNCCYRHHDGGSKVATAGS 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,614,579
Number of Sequences: 59808
Number of extensions: 314050
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)