Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0029
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57393| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.78 
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)                  28   2.4  
SB_45989| Best HMM Match : TFIIE_alpha (HMM E-Value=5)                 28   3.2  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_39083| Best HMM Match : PhaC_N (HMM E-Value=0.7)                    27   4.2  
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      27   5.5  
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   5.5  
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    27   7.3  

>SB_57393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 568

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 21  RGSNRSVANTGKSSASQNLPPDRKR--DSLRSSGEKLSGLIVRSTLFISPFYLHVSRALP 194
           R  N+++A + K   +Q L    KR  +   ++ EK   +++  T+  SPFY H +  + 
Sbjct: 77  RQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKRQLILLPMTMQDSPFYYHSTFYVL 136

Query: 195 LYS 203
           LY+
Sbjct: 137 LYA 139


>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
          Length = 625

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 27  SNRSVANTGKSSASQNLPPDRKRDSLRSSGEKLSGLIVRSTLFISPFYLHVSRALPLY 200
           S R  +NT  +S+ Q++P +R   +    G + +  ++RST F  P+     R +P Y
Sbjct: 289 SLRRASNTSTTSSQQSVPFNRLSRNSSGYGSQSNLALIRSTGFQPPY--SFGREIPQY 344


>SB_45989| Best HMM Match : TFIIE_alpha (HMM E-Value=5)
          Length = 194

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +1

Query: 289 VNLRELF*LTQSEELVWMAN-----KKMYFTIEFILAREPP 396
           V   +L  LT S+ L W A+     KK+YF IE   AR PP
Sbjct: 25  VKSTKLLGLTISDNLSWNAHVNEVAKKLYFLIELKRARLPP 65


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 3   GTRVSSRGSNRSVANTGKSSASQNLPPDRKRDSLRSSGEKLS 128
           G+R SSR ++RS +++   S S++L   R R    S+   +S
Sbjct: 228 GSRNSSRSASRSQSHSVSRSRSKSLSQSRSRSQSHSASRSVS 269


>SB_39083| Best HMM Match : PhaC_N (HMM E-Value=0.7)
          Length = 369

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 50  WQEQCFAESTTGSKTRLTEKFRRETQWADSAQYFVYFAFLFTR 178
           WQ   F++  T    +L+EK R+  ++ADS+      A L T+
Sbjct: 177 WQSPDFSDCVTDEYMQLSEKSRKLAEFADSSPLIRDLAQLTTQ 219


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 60  CSCQC*QHSGLSPVSSPSC 4
           CSC+C  H  L  + SPSC
Sbjct: 787 CSCRCVPHRVLMSMCSPSC 805



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 60  CSCQC*QHSGLSPVSSPSC 4
           CSC+C  H  L  + SPSC
Sbjct: 591 CSCRCVPHYLLMSMCSPSC 609


>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 879

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 60  CSCQC*QHSGLSPVSSPS 7
           CSC+C  H  L P+ SPS
Sbjct: 102 CSCRCVSHHVLMPMCSPS 119


>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 84  PVVDSAKHCSCQC*QHSGLSPVSSP 10
           P+V S+  CSC+C  H  L P+ SP
Sbjct: 276 PIVCSS--CSCRCVSHHVLMPMCSP 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,134,862
Number of Sequences: 59808
Number of extensions: 197193
Number of successful extensions: 469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)