Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0022
         (347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38127| Best HMM Match : DUF850 (HMM E-Value=3e-19)                  71   3e-13
SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_25467| Best HMM Match : Voltage_CLC (HMM E-Value=2.4e-10)           27   4.2  
SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09)                 26   7.3  
SB_52639| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   7.3  
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)               26   7.3  
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)               26   9.7  
SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)           26   9.7  

>SB_38127| Best HMM Match : DUF850 (HMM E-Value=3e-19)
          Length = 141

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 31/49 (63%), Positives = 40/49 (81%)
 Frame = +3

Query: 108 MPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKKIELIQVQD 254
           M EL+LDP IR WV LPIVIITFL+GI+RHY+S++L S+K ++L  V D
Sbjct: 1   MAELVLDPAIRLWVILPIVIITFLIGIIRHYLSILLHSKKDVDLQGVTD 49


>SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 41  IHILKNKINYLRHK*NIESAKPNARVTFRSKYPILGVSTHCHNYIFGWNC 190
           I + + +I++L+    +  AK   +V   +KY +   S    +Y+ GWNC
Sbjct: 270 IAVDEGRISHLKEAIEVLIAKRPIQVAKNNKY-VFAASMESMSYLKGWNC 318


>SB_25467| Best HMM Match : Voltage_CLC (HMM E-Value=2.4e-10)
          Length = 300

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 144 WVFLPIVIITFLVGIVRHYVS 206
           WV  P+V+ITF VG   H VS
Sbjct: 80  WVLFPLVLITFSVGFT-HLVS 99


>SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09)
          Length = 818

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 251 LNLNKFNLFLRGQYK*YIVSHNSNQKCNYDNG 156
           L ++ ++  L   Y  Y++ +++  KC YD G
Sbjct: 600 LEMDGYDTVLVSYYDSYVIDNHTFNKCTYDKG 631


>SB_52639| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 359

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  SEI*NLLSQMPELLLDPNIRFWVFLPIV 164
           S+I    + MP ++ +  IR WVF PIV
Sbjct: 71  SDILITFTGMPNMITEQYIRHWVFGPIV 98


>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
          Length = 2261

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 98  AKPNARVTF--RSKYPILGVSTHCHNYIFGWNCETLCI 205
           ++P  R+    R +YP++  S     +I  +NCETL I
Sbjct: 707 SRPVTRIKILPRQRYPLVDKSNKSRCFIILFNCETLNI 744


>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
          Length = 580

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 149 VSTHCHNYIFGWNC-ETLCITY 211
           VSTHC  YI  W+C ET+ I +
Sbjct: 465 VSTHCEQYI-QWDCYETMFIAH 485


>SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)
          Length = 252

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 178 KNVIMTMGRNTQNRIFGSKSNSGIW 104
           +NV++   RNTQ    G +S S +W
Sbjct: 18  ENVVVVSDRNTQRSDNGDESGSTVW 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,007,101
Number of Sequences: 59808
Number of extensions: 170916
Number of successful extensions: 343
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)