Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0093
(397 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 99 8e-27
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 31 0.45
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 24 1.0
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 29 1.4
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 3.2
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8) 27 4.2
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_20446| Best HMM Match : HLH (HMM E-Value=1.26117e-44) 27 5.5
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 6.8
SB_52495| Best HMM Match : AT_hook (HMM E-Value=4.6) 27 7.3
SB_37509| Best HMM Match : PAE (HMM E-Value=0) 27 7.3
SB_31608| Best HMM Match : DUF298 (HMM E-Value=3.9) 27 7.3
SB_59641| Best HMM Match : PAE (HMM E-Value=0) 27 7.3
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) 27 7.3
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23) 26 9.6
SB_49038| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 26 9.6
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 98.7 bits (235), Expect(2) = 8e-27
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +2
Query: 41 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 220
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 38.3 bits (85), Expect(2) = 8e-27
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +2
Query: 320 QLTDISDDGYLTLMADNGDLREDLKI 397
++T+I +DGYL LM DNGD R D+K+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKL 668
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 30.7 bits (66), Expect = 0.45
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 54 TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 188
T+K HT++P T P P N+ P + + +L ++H + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 6 HISFLTVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 128
H L K KT + T+K +T++P T P+ P +PC
Sbjct: 92 HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
Score = 27.9 bits (59), Expect = 3.2
Identities = 24/92 (26%), Positives = 36/92 (39%)
Frame = +3
Query: 27 VKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPEST 206
+K T + T+K HT++P T P P +P T H + P+
Sbjct: 29 IKLYTTKPRTTKPHTTKPHTTKPHTIKPHTTKP--HTTKPHTTKPHTTKPRTTKPQTTKP 86
Query: 207 XTLKFTWLGLISSMVKSMKISVPPHTTWTYPT 302
T K + L ++ K+ K PHT Y T
Sbjct: 87 HTTKPHTIKLYTTKPKTTK----PHTNKPYTT 114
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 39 TQQWVTSKTHTSRPETPGPQPPSPCNVRP 125
T + T+K T++P T P PC +P
Sbjct: 108 TNKPYTTKPRTTKPRTTKPHTTKPCTTKP 136
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 30 KFKTQQWVTSKTHTSRPETPGPQPPSPCNVRP 125
K +T + T+K HT++P T P P +P
Sbjct: 155 KPRTTKPPTTKPHTTKPHTTKPHTTKPHTTKP 186
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 30.7 bits (66), Expect = 0.45
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 42 QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 197
+Q V S P P P PP+PC + PC +T +VVH+ L P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 24.2 bits (50), Expect(2) = 1.0
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 105 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTXTLKFTWLGLISSMVKSMK 263
+PC ++ C + +S+ V ++K P P TL ++G + +K +K
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVK 450
Score = 23.8 bits (49), Expect(2) = 1.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 87 PGPQPPSPCNVRP 125
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 21 TVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRP 125
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 131 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 250
+ G +M +G+PCKI + K G HG +H+ G D NG
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +2
Query: 245 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 373
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 27.9 bits (59), Expect = 3.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 57 SKTHTSRPETPGPQPPSPCNV 119
++T T++PET P+PP+P +
Sbjct: 165 TETTTTKPETKPPKPPAPSTI 185
>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 27.5 bits (58), Expect = 4.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 57 SKTHTSRPETPGPQPPSP 110
++T T +P TP P PP+P
Sbjct: 288 TRTPTPKPRTPTPSPPTP 305
>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 72 SRPETPGPQPPSPCNVRP 125
+RP TPG +PP P N P
Sbjct: 166 TRPTTPGMRPPEPINDAP 183
>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
Length = 1007
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 297 GTSMLCVEGQISSYFLPLKISIPTK*TLAXPCFPVL 190
GT L +GQ+S +FL + IS P L CF +L
Sbjct: 962 GTDKLISDGQVSHFFL-IDISYPCNVLLDKDCFILL 996
>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 39 TQQWVTSKTHTSRPETPGPQPP-SPCNVRPCVKTVSL 146
T + +K HTS TPG P SP + P T SL
Sbjct: 262 TPEMAVNKRHTSVSHTPGGVVPFSPASFSPAAATPSL 298
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 356 GSGSHHPRYQSVGSLRASRGVRPC-CVWRDRYL 261
G+GS HP Y +V V PC C W+ + L
Sbjct: 517 GAGSPHPHYHAVQGANGQYSV-PCNCTWQPQDL 548
>SB_20446| Best HMM Match : HLH (HMM E-Value=1.26117e-44)
Length = 424
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 18 LTVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPH 188
L +K KT+ +SKTH S P + V C +T+ L + ++A+ +C H
Sbjct: 371 LNDIKLKTEI-NSSKTHASAPSSASIADTGNYKVTECWRTIELHLKTLYAK--QCKH 424
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 335 RYQSVGSLRASRGVRPCCVWRDR 267
RY V +R S G++ C V+RDR
Sbjct: 359 RYTGVSGIRGSFGLQGCPVYRDR 381
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 23.8 bits (49), Expect(2) = 6.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 57 SKTHTSRPETPGPQPPSPCNVRPCV 131
SK+H + T GP+ SP N R +
Sbjct: 4412 SKSHPMQARTQGPRTHSPYNGRKSI 4436
Score = 21.0 bits (42), Expect(2) = 6.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 177 KCPHPKPESTXTLKFTWLGLISSMVKSMK 263
K P P ++ FTW ISS+ SM+
Sbjct: 4474 KNPGYGPAKELSIAFTWGFSISSLRSSMQ 4502
>SB_52495| Best HMM Match : AT_hook (HMM E-Value=4.6)
Length = 183
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 162 GRPFSITKPFLRRAEHCMGKVAEAPE 85
GRP +P L EHC GK+ E P+
Sbjct: 134 GRPRE--QPVLAEVEHCHGKLTERPK 157
>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
Length = 483
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/48 (20%), Positives = 19/48 (39%)
Frame = +3
Query: 153 RVVHARLLKCPHPKPESTXTLKFTWLGLISSMVKSMKISVPPHTTWTY 296
+++H R + C P ++ + L V + PH +W Y
Sbjct: 334 QIIHVRGVSCEPPDYREAQRMRTNSIDLTRGHVSRRSLPNKPHPSWAY 381
>SB_31608| Best HMM Match : DUF298 (HMM E-Value=3.9)
Length = 203
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 162 GRPFSITKPFLRRAEHCMGKVAEAPE 85
GRP +P L EHC GK+ E P+
Sbjct: 154 GRPRE--QPVLAEVEHCHGKLTERPK 177
>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
Length = 1252
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/48 (20%), Positives = 19/48 (39%)
Frame = +3
Query: 153 RVVHARLLKCPHPKPESTXTLKFTWLGLISSMVKSMKISVPPHTTWTY 296
+++H R + C P ++ + L V + PH +W Y
Sbjct: 1103 QIIHVRGVSCEPPDYREAQRMRTNSIDLTRGHVSRRSLPNKPHPSWAY 1150
>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
Length = 605
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 60 KTHTSRPETPGPQPPSP 110
K H +P P P PPSP
Sbjct: 344 KEHPDKPRDPAPVPPSP 360
>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 39 TQQWVTSKTHTSRPETPGPQPPSPCN 116
T W + P P P PP PC+
Sbjct: 131 TDAWRRRRRRNPPPPPPPPSPPPPCH 156
>SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)
Length = 977
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 131 KNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 238
K+G ++L GR C++ + ++ KH + VH ID
Sbjct: 837 KDGRILLYGRVCEMERIIRTEKRKHSISLVHESEID 872
>SB_49038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 21 TVVKFKTQ--QWVTSKTHT-SRPETPGPQPPSPCNVRPC 128
TV+ FKT+ Q + +K ++ RP P P+ P P + C
Sbjct: 305 TVIVFKTELAQALIAKFNSRKRPRVPAPKLPIPSTLSSC 343
>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 206 GHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHV 304
G + H + + NGK+Y D+C + + VP V
Sbjct: 50 GALRYHEGNLQVCNGKEYVDVC-ANNRASVPEV 81
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 72 SRPETPGPQPPSPCN 116
+RP TPG +PP P N
Sbjct: 52 TRPTTPGMRPPEPIN 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,702,929
Number of Sequences: 59808
Number of extensions: 302734
Number of successful extensions: 990
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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