Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0082
(300 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10) 31 0.17
SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06) 29 0.92
SB_53140| Best HMM Match : F5_F8_type_C (HMM E-Value=1.9e-13) 28 1.6
SB_29899| Best HMM Match : 7tm_1 (HMM E-Value=1.96182e-44) 28 1.6
SB_20365| Best HMM Match : 7tm_1 (HMM E-Value=0.0012) 28 1.6
SB_7284| Best HMM Match : F5_F8_type_C (HMM E-Value=7.3e-10) 28 1.6
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 26 4.9
SB_19419| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
Length = 466
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 70 CPICCYELYYLSRS--TIS*WIWLPRSKVISKYIIHD 174
C IC YE Y+L R+ T W+ PRS+ +YII D
Sbjct: 149 CEICKYE-YHLQRTPKTFRQWLKNPRSRTERRYIIGD 184
>SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06)
Length = 619
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 198 ENDDFLDSIDNNHLEGTNGSMNMTDNSLGGGDE 296
E+DD D DN+ + NG+++ DN GG D+
Sbjct: 499 ESDDDDDDDDNDEDDERNGNVDNDDNVNGGNDD 531
>SB_53140| Best HMM Match : F5_F8_type_C (HMM E-Value=1.9e-13)
Length = 407
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 32 ILCNSNTDCNLKTVLFVVMNCIT*VG 109
+LC S T ++ LF+V+NC++ G
Sbjct: 194 LLCRSTTRVGIEATLFLVINCLSLFG 219
>SB_29899| Best HMM Match : 7tm_1 (HMM E-Value=1.96182e-44)
Length = 520
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 32 ILCNSNTDCNLKTVLFVVMNCIT*VG 109
+LC S T ++ LF+V+NC++ G
Sbjct: 17 LLCRSTTRVGIEATLFLVINCLSLFG 42
>SB_20365| Best HMM Match : 7tm_1 (HMM E-Value=0.0012)
Length = 166
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 32 ILCNSNTDCNLKTVLFVVMNCIT*VG 109
+LC S T ++ LF+V+NC++ G
Sbjct: 17 LLCRSTTRVGIEATLFLVINCLSLFG 42
>SB_7284| Best HMM Match : F5_F8_type_C (HMM E-Value=7.3e-10)
Length = 725
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 32 ILCNSNTDCNLKTVLFVVMNCIT*VG 109
+LC S T ++ LF+V+NC++ G
Sbjct: 214 LLCRSTTRVGMEATLFLVINCLSLFG 239
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 5 SVNILHQIVI-LCNSNTDCNLKTVLFVVMNCI 97
+++ LHQI++ LC + D L++++F + CI
Sbjct: 84 TIDNLHQIMVTLCCLSLDLRLQSIMFDIEMCI 115
>SB_19419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 5 SVNILHQIVI-LCNSNTDCNLKTVLFVVMNCI 97
+++ LHQI++ LC + D L++++F + CI
Sbjct: 84 TIDNLHQIMVTLCCLSLDLRLQSIMFDIEMCI 115
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 210 FLDSIDNNHLEGTNGSMNMTDNSLGGG 290
FLDS + N + N M + +LGGG
Sbjct: 339 FLDSSEGNQVYLANSKMESNEAALGGG 365
>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 198 ENDDFLDSIDNNHLEGTNGSMNMTDNS 278
+N+D D+ DNN G N + N DN+
Sbjct: 310 DNNDNNDNYDNNGNNGNNDNYNNYDNN 336
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 198 ENDDFLDSIDNNHLEGTNGSMNMTDNS 278
+N+D D+ DNN G N + N DN+
Sbjct: 376 DNNDNNDNYDNNGNNGNNDNYNNYDNN 402
>SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 198 ENDDFLDSIDNNHLEGTNGSMNMTDNS 278
+N+D D+ DNN G N + N DN+
Sbjct: 149 DNNDNNDNYDNNGNNGNNDNYNNYDNN 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,635,467
Number of Sequences: 59808
Number of extensions: 153932
Number of successful extensions: 567
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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