SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0076
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 36   0.039
SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2)                31   0.63 
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_13895| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)                   30   1.9  
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                29   3.4  
SB_11647| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           29   4.5  
SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083)                   29   4.5  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)                         29   4.5  
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             29   4.5  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     28   7.8  
SB_39531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              28   7.8  
SB_14919| Best HMM Match : MAM (HMM E-Value=0)                         28   7.8  

>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
 Frame = -1

Query: 536  RVYLARRRHDVGRHRAC-RVRHTLGGFTHVYRRGLSRSRTHHAALS*MRRHSRCRFVVKR 360
            R+     RH + R  A  R RH L    H  R GL+R RT H       RH   R  ++ 
Sbjct: 1318 RIRCGLARHTIRRGLARHRTRHGLA--RHTIRHGLTRHRTRHGLARHTIRHGLARHTIRH 1375

Query: 359  MWTGHR*ILIHSRHREAI--HHTR 294
                HR  L   R R  +  H TR
Sbjct: 1376 GLAEHRHGLAWHRIRHGLPRHRTR 1399



 Score = 34.3 bits (75), Expect = 0.090
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = -1

Query: 536  RVYLARRR--HDVGRHRACRVRHTLGGFTHVYRRGLSRSRTHHAALS*MRRHSRCRFVVK 363
            R+ LAR R  H + RHR   +RH L    H  R GL+R R  H       RH   R  ++
Sbjct: 1214 RLGLARHRIRHGLARHR---IRHGLA--RHRTRHGLARHRIRHGLARHRIRHGLARHRIR 1268

Query: 362  RMWTGHR*ILIHSRHREAIHHTRIR 288
                    +L   R R  +   RIR
Sbjct: 1269 HGLXXXXHVLARHRIRHGLARHRIR 1293



 Score = 34.3 bits (75), Expect = 0.090
 Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 8/113 (7%)
 Frame = -1

Query: 614  RGGIRAVSHAIAWKLSIMSLWR-RISRRVYLARRRHDVGRHRACRVRHTL-------GGF 459
            R G+    H +A       L R RI   +   R RH + RHR   +RH L       G  
Sbjct: 1268 RHGLXXXXHVLARHRIRHGLARHRIRHGLARHRIRHGLARHR---IRHGLALHRIRCGLA 1324

Query: 458  THVYRRGLSRSRTHHAALS*MRRHSRCRFVVKRMWTGHR*ILIHSRHREAIHH 300
             H  RRGL+R RT H       RH   R   +     H   + H   R  I H
Sbjct: 1325 RHTIRRGLARHRTRHGLARHTIRHGLTRHRTRHGLARH--TIRHGLARHTIRH 1375



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 25/74 (33%), Positives = 31/74 (41%)
 Frame = -1

Query: 521  RRRHDVGRHRACRVRHTLGGFTHVYRRGLSRSRTHHAALS*MRRHSRCRFVVKRMWTGHR 342
            R RH + RHR    RH L    H  R GL+R R          RH   R  +++   GHR
Sbjct: 1388 RIRHGLPRHRT---RHGLA--RHRIRSGLARHRIRSGLAWHRTRHGLARHRIRQGLAGHR 1442

Query: 341  *ILIHSRHREAIHH 300
              + H   R  I H
Sbjct: 1443 --IRHGLARHTIRH 1454



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
 Frame = -1

Query: 554  WRRISRRVYLARRRHDVGRH--RACRVRHTL--GGFTHVYRRGLSRSRTHHAALS*MRRH 387
            W RI   +   R RH + RH  R+   RH +  G   H  R GL+R R          RH
Sbjct: 1386 WHRIRHGLPRHRTRHGLARHRIRSGLARHRIRSGLAWHRTRHGLARHRIRQGLAGHRIRH 1445

Query: 386  SRCRFVVKRMWTGH 345
               R  ++     H
Sbjct: 1446 GLARHTIRHGLAEH 1459



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = -1

Query: 521  RRRHDVGRH--RACRVRHTLGGFTHVYRRGLSRSRTHHAALS*MRRHSRCRFVVKRMWTG 348
            R RH + RH  R    RHT+      +R GL+  R  H       RH   R  ++     
Sbjct: 1354 RTRHGLARHTIRHGLARHTIRHGLAEHRHGLAWHRIRHGLPRHRTRHGLARHRIRSGLAR 1413

Query: 347  HR 342
            HR
Sbjct: 1414 HR 1415


>SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2)
          Length = 228

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -1

Query: 551 RRISRRVYLARRRHDVGRHRACRVRHTLGGFTHVYRRG-LSRSR--THHAALS*MRRHSR 381
           R ISRR Y++RRR+ + R R    R  +    ++ RR  +SR R  +    +S  R  SR
Sbjct: 157 RYISRRRYISRRRY-ISRRRYISRRRYISRRRYISRRRFISRRRYISRRRYISRRRYISR 215

Query: 380 CRFVVKRMWTGHR 342
            RF+ +R   G +
Sbjct: 216 RRFIARRRRFGKK 228


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/85 (29%), Positives = 37/85 (43%)
 Frame = +3

Query: 174  HPSSSGMTHSVSSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGMNQDSPMTS 353
            HPS S    S+  LLG +Q        +++AP  P    +P   N    P +N  +P TS
Sbjct: 6374 HPSHSTTEPSLDELLGRVQP-------AISAPTKPSLELSPITYNN---PSINPPTPPTS 6423

Query: 354  PHAFNNKSASAMSPHLTQSGMMGAG 428
                 + S      ++  +G MGAG
Sbjct: 6424 NQTDQSCSQGLRINNVILNGGMGAG 6448


>SB_13895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -1

Query: 551 RRISRRVYLARRRHDVGRHRACRVRHTLGGFTHVYRRG-LSRSR--THHAALS*MRRHSR 381
           R ISRR Y++RRR+ + R R    R  +    ++ RR  +SR R  +    +S  R  SR
Sbjct: 45  RYISRRRYISRRRY-ISRRRYISRRRYISRRRYISRRRYISRRRYISRRRYISRRRYISR 103

Query: 380 CRFVVKRMWTGHR 342
            R++ +R +   R
Sbjct: 104 RRYISRRRFIARR 116


>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
          Length = 841

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 153 ESLSNDGHPSSSGMTHSVSSLLGGIQSKSRKNDVS--LTAPVAPVENSNPRMMNRLPMP 323
           E ++  G PS+SG+T + +SL G  Q+ +     S  LT+   P+  SNP  ++ +  P
Sbjct: 560 EVVTTIGSPSTSGVTITGTSLRGDSQAPAVSGSQSPPLTSSTPPMNPSNPIHVSPVAAP 618


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 410 RHDGCGTGTNRGGRHE*SRPGCAAPGKPDAAPRHAASGPDIPAWKSS 550
           R  G G G   G     S+PG   PG P   P      P IP W+++
Sbjct: 375 RPPGAGNGPG-GPPPPWSKPGGILPGPPPPGPPMLNMAPSIPPWQTT 420


>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/40 (47%), Positives = 23/40 (57%)
 Frame = -1

Query: 542 SRRVYLARRRHDVGRHRACRVRHTLGGFTHVYRRGLSRSR 423
           SRR Y+ RRR    R RA R R+T   +T   RRG +R R
Sbjct: 356 SRRRYIRRRRF-TSRRRATRRRYTRRRYTR--RRGSTRRR 392


>SB_11647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 478 RTRQARCRPTSCRLRARYTRLEILRHKLIMD 570
           R+  A C  T+C  RA+YTR    RH L +D
Sbjct: 9   RSIHALCHDTTCT-RAQYTRYATTRHALALD 38


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +3

Query: 267 PVAPVENSNP---RMMNRLPMPGMNQDSPMTSPHAFNNKSASAMSPHLTQSGMMGAGPGQ 437
           P+   +  NP   R +N   +P   QD P T P   N       +P  T++  + + P +
Sbjct: 247 PITGQDRPNPGPERPINVPDVPITGQDRPNTGPDGLNTAPDLPKTPDNTRASALASPPAK 306

Query: 438 ---TAAVDM 455
               AAVDM
Sbjct: 307 ECVLAAVDM 315


>SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083)
          Length = 497

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 186 SGMTHSVSSLLGGIQSKSRKNDVSLTA-PVAPVENSNPRMMNRLPMPGMNQDSPMTS 353
           +G  ++    L  I+  SR++ + +   P+ P EN+N  +  R   PG++ ++P  S
Sbjct: 58  AGDLNTKKKSLDDIEQYSRRDCLEIKGVPLTPTENTNDVVKERPAKPGVHVNTPTAS 114


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 234  KSRKNDVSLTAPVAPVENSNPRMMNRLPM-PGMNQDSPMTSPHAFNNKSASAMSPHL 401
            KS+K   + +   A +E   P    R  + P     +PMT+P     +  S MSP L
Sbjct: 1082 KSKKKPSAKSGSAAAIETPKPTKYQRTALEPIQEVPTPMTTPRNTRLRKDSVMSPTL 1138


>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
          Length = 893

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 204 VSSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGMNQDSPM-TSPHAFNNKSA 380
           VS L   I +K R+      +P  PVE + PR ++  P   +N DS   T+PHA NN   
Sbjct: 550 VSLLNTKIDTKPRRAFTPAKSP-PPVETT-PRSIS--PSEPINSDSVTGTTPHAINNLGN 605

Query: 381 SAM 389
           S M
Sbjct: 606 STM 608


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 431 GTNRGGRHE*SRPGCAAPGKPDAAPRHAASGPDIP 535
           GT RGG      P  A P  PD  PR   +G  IP
Sbjct: 217 GTGRGGTVP-PTPATAPPPNPDGTPRPEINGKKIP 250


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 291 NPRMMNRLPMPGMNQDSPMTSPHAFNNKSASAMSPHLTQSGMMGAGP 431
           N R +N LP P   QD+P T P + N + A+  +P    S   GA P
Sbjct: 421 NFRTLNELPPPEPYQDTPKTYP-SKNQQKANRGNPR-PASSSRGAPP 465


>SB_39531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 207 SSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGMNQDSPMTSPHAF 365
           +S+LG I   +R+++   ++ +   E SN +   + P P   +D P+     F
Sbjct: 25  TSILGSI---ARRDEERFSSEIRATEQSNTKKPTKCPAPNTEKDGPLIKHFRF 74


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 291 NPRMMNRLPMPGMNQDSPMTSPHAFNNKSASAMSPHLTQSGMMGAGP 431
           N R +N LP P   QD+P T P + N + A+  +P    S   GA P
Sbjct: 333 NFRTLNELPPPEPYQDTPKTYP-SKNQQKANRGNPR-PASSSRGAPP 377


>SB_14919| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1332

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
 Frame = -1

Query: 362 RMWTGHR*ILIHS--RHREAIHHTRIRI 285
           R+W+G+R +L+ +  +H+E   +TR+RI
Sbjct: 870 RIWSGNRTVLVQNARKHQELYTNTRVRI 897


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,626,727
Number of Sequences: 59808
Number of extensions: 378495
Number of successful extensions: 1156
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -