Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0055
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_595| Best HMM Match : CH (HMM E-Value=0) 150 1e-36
SB_15403| Best HMM Match : CH (HMM E-Value=0) 111 5e-25
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 29 2.5
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14) 29 4.4
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 28 7.6
>SB_595| Best HMM Match : CH (HMM E-Value=0)
Length = 905
Score = 150 bits (363), Expect = 1e-36
Identities = 73/123 (59%), Positives = 89/123 (72%)
Frame = +1
Query: 4 MRAYTLSVLTRLANTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLID 183
MRAYTL+VL + A + P+ E EIV WVN KL SAGK ++I +D + K V+DLID
Sbjct: 777 MRAYTLTVLQKCAGSEKPVTEAEIVVWVNEKLSSAGKATTITGMKDPEIKTSKCVLDLID 836
Query: 184 AIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTVFAC 363
AIKP +INY +V G +E+ NAKYAISMAR+ G RVYALPED+ E K KM+MTVFAC
Sbjct: 837 AIKPKAINYSMVNAGECQEDAFLNAKYAISMARKVGARVYALPEDLVEGKSKMVMTVFAC 896
Query: 364 LMA 372
LMA
Sbjct: 897 LMA 899
Score = 36.7 bits (81), Expect = 0.016
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +1
Query: 64 EKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINYDLV-----LPG 228
EK W+N S G + +++ + L DG ++ L D ++PG +NYD V
Sbjct: 675 EKTFRNWIN----SLGIKPFVQNLYLD-LDDGMILFQLFDQVQPGIVNYDKVNKPPFKKM 729
Query: 229 GNEEENLANAKYAISMA 279
G + + L N YAIS+A
Sbjct: 730 GAKMKKLENCNYAISVA 746
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 111 bits (267), Expect = 5e-25
Identities = 61/127 (48%), Positives = 83/127 (65%), Gaps = 4/127 (3%)
Frame = +1
Query: 1 LMRAYTLSVLTRLANTGNPIIEKEIVQWVNNKLQSAGKQSSIRS---FQDEVLADGKVVI 171
+MRAYT ++L RL+ + + E++IV+WVN LQS K I F+D ++ V+
Sbjct: 411 MMRAYTYTLLARLSPDDDHMTEEKIVEWVNKTLQSKKKTHLINKGHGFKDPDISTSLAVL 470
Query: 172 DLIDAIKPGSINYDLVLPGG-NEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIM 348
DLID I P IN L+ P ++E+ L NA+YAISMAR+ G VYALPED+ E K KM++
Sbjct: 471 DLIDCISPKMINPALINPDPLSDEDKLPNAQYAISMARKIGAVVYALPEDLVEVKRKMVL 530
Query: 349 TVFACLM 369
TVFA LM
Sbjct: 531 TVFASLM 537
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 190 KPGSINYDLVLPGG-NEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMT 351
+PGSI LVL GG + +YA ++ G RVY + T R+P+++ T
Sbjct: 3732 RPGSIRIMLVLFGGPHSSGQYPTPQYASQQLQQAGVRVYTVGYGRTFRQPEVLWT 3786
>SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 64 EKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINY 210
+K +WVN+ L +G + F+D LADGK++I L++ I I +
Sbjct: 53 KKTFTKWVNSFLDKSGLHVN-DLFED--LADGKILISLLEIISGEKIGF 98
>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 49 GNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINYDLVLPG 228
G P+ E +VQ + + + S+R F + +L K D+ A+ G ++ D +P
Sbjct: 273 GKPVKEPNLVQDIKGDMNRLDMKKSVREFAERLLTLTKQ--DVSGAVAAGHVHED--VPA 328
Query: 229 GNEEEN 246
N+++N
Sbjct: 329 ENKQDN 334
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 311 PRTSPNGSPR*S*RCSPALWRWTTYPPWTRPSSRKSDRP 427
PR S N S + S + SP R T+ +R SSRKS RP
Sbjct: 351 PRNSRNSSRKSSPKPSPRSSRPTSSRKLSRKSSRKSSRP 389
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 311 PRTSPNGSPR*S*RCSPALWRWTTYPPWTRPSSRKS 418
PR +P SPR S R SP + P +R SSRKS
Sbjct: 326 PRATPRASPRASPRASPRDQSSHSSPRNSRNSSRKS 361
>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
Length = 925
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 374 WTTYPPWTRPSSRKSDRPEL 433
W TY PWT P S S+ EL
Sbjct: 828 WNTYEPWTSPRSFNSNDHEL 847
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/66 (19%), Positives = 30/66 (45%)
Frame = +1
Query: 91 NKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINYDLVLPGGNEEENLANAKYAI 270
++L+ ++ + ++D + + + ++ D ++ S + VLP GN+ N K
Sbjct: 427 SQLKKTLPENILSKYEDRLQEEALSLAEMEDLVRCPSCEFAAVLPSGNKVFKCLNQKCGK 486
Query: 271 SMARRC 288
R C
Sbjct: 487 ETCRHC 492
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,403,347
Number of Sequences: 59808
Number of extensions: 404976
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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