Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0008
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18) 97 8e-21
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17) 38 0.006
SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095) 33 0.18
SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 30 1.3
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5) 29 3.0
SB_36565| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13) 29 4.0
SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9) 27 9.1
>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
Length = 563
Score = 97.5 bits (232), Expect = 8e-21
Identities = 41/67 (61%), Positives = 50/67 (74%)
Frame = +1
Query: 163 GTMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNI 342
GT C NC TT T+LWRRN G+ VCNACGLY+KLH VNRPL+MKKD IQTR RK + +
Sbjct: 409 GTSCANCHTTQTTLWRRNQNGDPVCNACGLYWKLHAVNRPLSMKKDGIQTRNRKVSSKSK 468
Query: 343 KADRSAK 363
+++ K
Sbjct: 469 NKNKNVK 475
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = +1
Query: 1 LWRRDGTGHYLCNACGLYNKMNGMNRPLKQPRRLVRQRHAALAA 132
LWRR+ G +CNACGLY K++ +NRPL + ++ R+ +++
Sbjct: 422 LWRRNQNGDPVCNACGLYWKLHAVNRPLSMKKDGIQTRNRKVSS 465
>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
Length = 297
Score = 37.9 bits (84), Expect = 0.006
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQGETVCNACGLYFKLHNV 273
C +C T LWR G +CNACG+ +K + +
Sbjct: 223 CASCGVAKTPLWRDAEDGTPLCNACGIRYKKYRI 256
>SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095)
Length = 225
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRK--RKPKNSNIK 345
C C+ + +WR+ GE +CN C + K N + T ++ S ++RK + K S+ K
Sbjct: 9 CFACKINESLMWRKGANGEILCNCC--HLKRVNAS-TRTQRQSSKESRKLVARIKASSRK 65
Query: 346 ADRSAKA 366
+ K+
Sbjct: 66 GHHNGKS 72
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 1 LWRRDGTGHYLCNACGLYNKMNGMNRPLKQPRRLVRQRHAALAA 132
+WR+ G LCN C L ++N R +Q + R+ A + A
Sbjct: 19 MWRKGANGEILCNCCHL-KRVNASTRTQRQSSKESRKLVARIKA 61
>SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -1
Query: 309 LNGVLLHGERSVDVVQLEVEAARVADRLALHVAAPQ 202
+ G +LH +RSV V LE E ARV +A H++A Q
Sbjct: 16 ITGAILHVQRSVSV--LESEYARVEAMMAQHLSADQ 49
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 250 LYFKLHNVNRPLTMKKDSIQTRKRKPK-NSNIKADRSAKAVQRAVSAGIKMESILESARR 426
L K ++ ++P + K+ ++KRKPK A ++AV + AG + S+L SA
Sbjct: 121 LEMKQYSSDKPPSKKQKDPSSKKRKPKGKEGTAAPLHSEAVDSSGVAGDQRSSLLVSATL 180
Query: 427 SP 432
+P
Sbjct: 181 NP 182
>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 250 LYFKLHNVNRPLTMKKDSIQTRKRKPK-NSNIKADRSAKAVQRAVSAGIKMESILESARR 426
L K ++ ++P + K+ ++KRKPK A ++AV + AG + S+L SA
Sbjct: 50 LEMKQYSSDKPPSKKQKDPSSKKRKPKGKEGTAAPLHSEAVDSSGVAGDQRSSLLVSATL 109
Query: 427 SP 432
+P
Sbjct: 110 NP 111
>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/92 (26%), Positives = 35/92 (38%)
Frame = +1
Query: 256 FKLHNVNRPLTMKKDSIQTRKRKPKNSNIKADRSAKAVQRAVSAGIKMESILESARRSPP 435
F LH + R L +K + + PK N K D K + + A + + S S P
Sbjct: 137 FILHYLARCLCIKIEESGSEVEIPKAINFKLDDIEKRQSKLLGARMYRVNNCYSELSSTP 196
Query: 436 RLGYYVQSAEGMKLEEPQHHVMYIGVPELGPH 531
+ Q + PQ + G ELG H
Sbjct: 197 NVNVLDQKKPYDTFDSPQFSKIADGFRELGRH 228
>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
Length = 696
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 502 YIGVPELGPHKAAPHHDHSAVSLAS*ASRP 591
YI V +L PHK PH H A S + S P
Sbjct: 173 YIDVDKLRPHKTKPHKAHGANSGGAPESSP 202
>SB_36565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 150 RQKTGHDVHQLPDH--GDVPVAPQRAGRDGLQR 242
R GHDVHQL D G VP ++A R+ +R
Sbjct: 216 RLDAGHDVHQLSDEEKGGVPEEVKQAAREVARR 248
>SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13)
Length = 473
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = -1
Query: 375 SLYCLSASVSLNITVLWFPFSRLNGVLLHGERSVDVV 265
SLY +SA + + I V+++ +SR+ ++L + +D +
Sbjct: 179 SLYYISAHLLVGIVVIYWTYSRIFRLVLRHRKQIDTI 215
>SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = -1
Query: 375 SLYCLSASVSLNITVLWFPFSRLNGVLLHGERSVDVV 265
SLY +SA + + I V+++ +SR+ ++L + +D +
Sbjct: 316 SLYYISAHLLVGIVVIYWTYSRIFRLVLRHRKQIDAL 352
>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = +1
Query: 28 YLCNACGLYNKMNGMNRPLKQPRRLVRQRHAALAAPPHDMGAKRPGTMC---TNCQTTAT 198
++ NACG + PL +P+ +A P D + G++C + C+++
Sbjct: 4 FILNACG--EEKVAEEEPLGKPKAAEESSESA-PPPVEDENKYKLGSLCNYCSYCKSSNA 60
Query: 199 SLWRRNVQGETVCNACGL 252
S R Q CN C L
Sbjct: 61 SSARDYYQRGLRCNCCSL 78
>SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9)
Length = 398
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 153 QKTGHDVHQLPDHGDVPVAPQRAGRDGLQRVRPLLQAAQRQPTS 284
+K+ HD+HQ + +A A GL VR L + A +Q T+
Sbjct: 283 RKSDHDIHQSSGNSPAMLAGAGAVCTGLLSVRALEKTAHQQGTA 326
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,534,332
Number of Sequences: 59808
Number of extensions: 335688
Number of successful extensions: 3186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3186
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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