Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060079.seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.17 
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)                 32   0.38 
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                32   0.50 
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_31611| Best HMM Match : Peptidase_M16_C (HMM E-Value=0.0021)        29   4.7  
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)               28   6.2  
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)                   28   6.2  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +2

Query: 152 WVPVTKLGRLXREGKIDKLESI 217
           WVPVTKLGRL ++ KI  LE I
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHI 29


>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
          Length = 439

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +3

Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
           P P  +      ++P  + P+  ++T+    P  P   E    + PP+ ++AP+ + PP
Sbjct: 35  PPPEPTQAPVADTDPPTNPPSVVEVTTTQAPPPPPVVTEAPTTVPPPVVTDAPTTVPPP 93


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 345 PSPAISATSTRSSN-PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
           P   IS TS  SS  PR H PTTP  T  +  P T            P +S+APSA   P
Sbjct: 257 PQTTISITSIISSAIPRGHLPTTPSTTPQATPPST------TSQTTAPTASQAPSAGETP 310

Query: 522 R 524
           +
Sbjct: 311 Q 311


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISP 518
           P+PA + T T+ + P  HTPTTP  T  +  P  P  K   P    P ++  P+  +P
Sbjct: 94  PTPATTPTPTKPT-PTAHTPTTP--TPTAHTPTKPTPKTPTPTTPTP-TAHTPTTPTP 147


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KE---FAPGLKPPLSSEAPSAIS 515
           P P ++  S +S+NPR HTP  P   S +  PLTP  ++     P   PP  S A    +
Sbjct: 77  PRP-LTPPSRQSNNPRPHTP--PSCQSNTPRPLTPPPRQSNTTQPPAYPPRQSYALQQTT 133

Query: 516 P 518
           P
Sbjct: 134 P 134


>SB_31611| Best HMM Match : Peptidase_M16_C (HMM E-Value=0.0021)
          Length = 398

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 354 AISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
           A+    T  +N R H   T D+T I  NP T + + F P     +    P  +SPP
Sbjct: 3   AVRNMLTNPANLRIHV--TADVTKIPTNPHTVWKESFLPEQSAVIPKSLPE-VSPP 55


>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
          Length = 1803

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = -1

Query: 400  VWNRGFDDRVDVAEIAG-----EGSLMHKGETANSNASG*RGGQHIDSFNC 263
            +W++     +DVAE+AG     EG       TA S   G     HID F C
Sbjct: 1545 LWHKDTAGHIDVAEVAGGGATNEGLKKRAAYTAQSVEVGLIVNLHIDIFKC 1595


>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
          Length = 841

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/86 (29%), Positives = 41/86 (47%)
 Frame = +2

Query: 269 EGVNVLATPSSARITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIYFHQSPDA 448
           E V  + +PS++ +TI G +L   +  P   G  +P + S  P  N P   I  H SP A
Sbjct: 560 EVVTTIGSPSTSGVTITGTSLRGDSQAPAVSGSQSPPLTSSTPPMN-PSNPI--HVSPVA 616

Query: 449 VLEGVRAGVKASVVIRGSISYLTPSS 526
              G  +G+ + ++      +L PS+
Sbjct: 617 APPG-SSGIGSELMDLQVDYWLVPST 641


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 348 SPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
           +P+  +T +  S P   +TP+TP   S    P+TP           P +   PS +S P
Sbjct: 681 TPSTPSTPSTPSTPSMPNTPSTPSTPSTPSTPITPGTPSTPSTPSAPGTPITPSTLSTP 739



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = +3

Query: 348 SPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
           +P   +T +  S P   TP+TP LT     P TP           P +   PS  S P
Sbjct: 430 TPGTPSTPSTPSTPS--TPSTPSLTHTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTP 485



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 342 LPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
           L +P+  +T +  S P   TP+TP   S    P TP           P +   PS  S P
Sbjct: 637 LSTPSTPSTPSTRSTPS--TPSTPSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTP 694


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 399 TPTTPDLTSISINPLTPY 452
           TPT PD+T +SI  L PY
Sbjct: 75  TPTRPDVTQLSITGLKPY 92


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 348 SPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPPRH 527
           SPA S + ++S++PR     +P L+ + +       ++  P   PP+     SA  PP H
Sbjct: 685 SPARSRSRSQSASPRHSKSKSPALSKVQVKT-----EKKTPS-PPPIKKTIGSASPPPSH 738


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,902,758
Number of Sequences: 59808
Number of extensions: 374102
Number of successful extensions: 1287
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)