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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060078.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)                       31   1.1  
SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)                       29   3.5  
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)                    29   3.5  
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)               29   4.6  
SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.6  
SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)                     28   6.1  
SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)                        28   6.1  
SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 299 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 400
           +PV    +++   + K  NN KY L   WY+K++
Sbjct: 7   LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40


>SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 263 LEKKNINYILNVMPVMQDERKMSKRKKKVINNNKY---ILFNSWYTKIKQPEWPSSPAMW 433
           +E K + Y      V +DE K+  RK+ +    +Y   ILFN++    ++ +W  S + W
Sbjct: 26  IEAKTMKYKYGCSDVPRDE-KLDLRKRSLYYLERYFYFILFNTYLNMERRSKWDRSFSQW 84


>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
          Length = 782

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 1   RHEKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPC 177
           + ++ S RK  C   +   +++ I+++  Q+  R  +K+ K+  + TC       +LR C
Sbjct: 61  KDDRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVC 120

Query: 178 AKMKS 192
           A ++S
Sbjct: 121 AVVRS 125


>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
          Length = 984

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 1    RHEKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPC 177
            + ++ S RK  C   +   +++ I+++  Q+  R  +K+ K+  + TC       +LR C
Sbjct: 828  KDDRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVC 887

Query: 178  AKMKS 192
            A ++S
Sbjct: 888  AVVRS 892


>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
          Length = 710

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 212 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 129
           RF    Q  I+AH  SF +R+LLR + H
Sbjct: 22  RFPRNPQKLIYAHQNSFKKRILLRRIEH 49


>SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 368

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 385 PTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLF 269
           P    N+ +++ +L  A   + +  HDR + E   N+LF
Sbjct: 313 PREVHNILLLMGYLNSALNPYMYSFHDRQFKEAFKNILF 351


>SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)
          Length = 504

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 502 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 380
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 395 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 434


>SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 502 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 380
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 240 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 279


>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 502 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 380
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 289 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 328


>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
          Length = 254

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 502 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 380
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 198 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 237


>SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 80  IIKNTSG-SFQRFTKIKHGKHAGATIFYRNCGRVQK*KVVE*TGIELLQQIQHGPANCYL 256
           I+K+T G  F R  K    K +      RNC  +++ K +E + ++L  +I  GP +   
Sbjct: 148 IVKHTKGVCFSRRAKDSVKKES------RNCSSIEERKAIENSTVDLCPEISRGPCSTRP 201

Query: 257 NF 262
           +F
Sbjct: 202 DF 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,814,304
Number of Sequences: 59808
Number of extensions: 470530
Number of successful extensions: 1176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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