Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060070.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30771| Best HMM Match : WD40 (HMM E-Value=2e-06)                    29   3.5  
SB_57561| Best HMM Match : fn3 (HMM E-Value=0)                         28   8.1  

>SB_30771| Best HMM Match : WD40 (HMM E-Value=2e-06)
          Length = 229

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 316 PDTPTNWIYFDLKFDHSHLKQGSRFACIALYTI 414
           P   T+W++     D++H+  GSR   IAL+ I
Sbjct: 10  PQAHTDWVFATEWIDNNHVTTGSRDGSIALWEI 42


>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1614

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 286 PHLVTRQTDSTLMKIAYRYFNGQVSQHSPRNNIHVTSVSRHIYITFQRTVSTPSLY 119
           P+++   T ST + +++        QH P  ++H   +  H+++T    V TPS+Y
Sbjct: 767 PNVIAYNTSSTSIAVSW--------QHIPEGHVHGILLGYHVFVTPYSNV-TPSVY 813


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,114,498
Number of Sequences: 59808
Number of extensions: 374029
Number of successful extensions: 807
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)