Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060069.seq
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)                    88   5e-18
SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                31   0.86 
SB_17445| Best HMM Match : YDG_SRA (HMM E-Value=1.3)                   31   0.86 
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.5  
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)                    29   4.6  
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         28   6.0  
SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)                   28   8.0  

>SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)
          Length = 174

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 40/86 (46%), Positives = 59/86 (68%), Gaps = 3/86 (3%)
 Frame = +3

Query: 255 DQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQL 434
           +QK KFE+D++F++L+RESE++YTGYRDR  EER +RF +  R+G + +A+  +GTNL L
Sbjct: 7   EQKQKFENDEMFRKLARESEIKYTGYRDRSHEERVVRFQTEIRDGQSNVAYVASGTNLTL 66

Query: 435 VFDHSP---YNNRGCDFQKENGKAHI 503
            F  +      +   DF +E GK HI
Sbjct: 67  HFPKAEDGFIRSEFLDFDREPGKVHI 92



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 30/55 (54%), Positives = 42/55 (76%)
 Frame = +2

Query: 512 FIMNGVCVRWRGWIDLERLDGAGCLELDEERAAIEDAALRDQIEXYNQRLRDFED 676
           FI+NGVC+ ++GWIDL+RLDG G +E DEE+A  ED  +R+ +E   QRL +FE+
Sbjct: 96  FILNGVCIIFKGWIDLQRLDGIGYIEYDEEKARKEDKIMRETLEQAKQRLAEFEE 150


>SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 39

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 21/32 (65%), Positives = 28/32 (87%)
 Frame = +2

Query: 512 FIMNGVCVRWRGWIDLERLDGAGCLELDEERA 607
           FI+NGVC+ ++GWIDL+RLDG G +E DEE+A
Sbjct: 7   FILNGVCIIFKGWIDLQRLDGIGYIEYDEEKA 38


>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 235 KMPRVVPIKKPNSNQTISSKDLAEKVRLDTLDTETGLPKNA 357
           +MP  +P++  NSN   S   ++    +DT+ + +G+P ++
Sbjct: 145 QMPVAIPVQHSNSNDDNSGYSVSRSSSVDTIGSNSGMPNSS 185


>SB_17445| Best HMM Match : YDG_SRA (HMM E-Value=1.3)
          Length = 284

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +1

Query: 199 SIYEQPKPRFIFKMPRVVPIKKPNSNQTISSKDLAEKV 312
           +I ++  P F F  P+++P+ KP S +  S+KD+ +KV
Sbjct: 54  NINQEHVPNFAFVRPQILPVLKPKSWER-STKDMIKKV 90


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 323 HWIPRPASRRTPDAVHERLPRGTHGDSVYRYRHKPSACLRSLT 451
           H +       TP +  ++  RG  GDSV   RH P   LR+L+
Sbjct: 847 HAVDEDGKPSTPPSRSKKRTRGISGDSVSDNRHTPRRSLRNLS 889


>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
          Length = 1075

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 261 KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQM-RFMSGCREGHTEIAFTGT 416
           KAK E  D+F +++ E E++  G+R+ P ++  + +   GC+    ++  T +
Sbjct: 431 KAK-EGKDMFTKIAEEYEIQVLGWREIPYDDTSLGKTSKGCQPYMEQVFVTSS 482


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 200 ESKGNMPANGEGSLIACITYGSYSFACTEPNIT*RACLTD 81
           E K + P   +G+ +   TYGSYS AC    +T + C TD
Sbjct: 762 ECKPSNPCRNDGTCVN--TYGSYSCAC-PTGLTGKNCETD 798


>SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 398 DSVYRYRHKPSACLRSLTLQQPRLRLSKGKWKSSHRIRFIMNG 526
           D + +    P     +LTL   RL L++GK K+S R   +M+G
Sbjct: 2   DGILKNTADPENSPDALTLSWRRLLLTRGKLKASSRTSALMSG 44


>SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)
          Length = 434

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 269 FGFLIGTTRGILKMNLGFGCS*IESKGNMPAN 174
           FG L+G  R I +  + FGCS + ++ ++  N
Sbjct: 77  FGLLLGVLRMIQERLINFGCSKVHNRESLETN 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,420,671
Number of Sequences: 59808
Number of extensions: 428665
Number of successful extensions: 1207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)