Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060057.seq
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_3426| Best HMM Match : Homeobox (HMM E-Value=3.4e-22) 32 0.50
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_39917| Best HMM Match : APH (HMM E-Value=0.00074) 29 2.7
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37) 29 3.6
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048) 28 6.2
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_37025| Best HMM Match : Homeobox (HMM E-Value=1.3e-16) 28 6.2
SB_14695| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_8032| Best HMM Match : IBB (HMM E-Value=0.46) 28 6.2
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_19986| Best HMM Match : bZIP_2 (HMM E-Value=5.7e-17) 28 8.2
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_55443| Best HMM Match : Homeobox (HMM E-Value=2.3e-26) 28 8.2
SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07) 28 8.2
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_5615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +2
Query: 500 GNYSHVTKSPAAAAAVDRLTDTSKYTGSH 586
G + T A AVDRLTDT KYTGSH
Sbjct: 103 GPVASKTTKVVKAGAVDRLTDTRKYTGSH 131
>SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 597 FDETGKGKGIAGRKDLVD--GSGYVTGYQHXXT 689
FD++GKGKGI GR D D GYV Y+ T
Sbjct: 479 FDKSGKGKGIEGRVDRDDKAAQGYVGNYKGEGT 511
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 509 SHVTKSPAAAAAVDRLTDTSKYTGSH 586
S TK+ V+RLTDT YTGSH
Sbjct: 451 SGATKA-VKVGGVERLTDTKCYTGSH 475
>SB_3426| Best HMM Match : Homeobox (HMM E-Value=3.4e-22)
Length = 245
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -1
Query: 673 YPVT*PDPSTKSFLPAXPFPLPVSSKALPVRTSIFARVCQSIYGRCGCR 527
YP T P P +F P+ PF P LPV + RVC CG R
Sbjct: 185 YPGTPPPPMYPAFPPSFPFSPPPEYPGLPVSSP--GRVCNRPDCNCGGR 231
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 73 KHL*RKMSTEAQ-NTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFKEAFKA 249
+ L RK S+E + N + +Q +E + + E G+ A NG +S +++ L +E
Sbjct: 559 RSLPRKFSSETEKNAEDLAKQAKKEGEGRQGETGDK--AENGLTSDADEKPLPTEEKLSH 616
Query: 250 FSNLEIPSPMEKPS 291
+ +IP P + S
Sbjct: 617 VKSSKIPDPSKHAS 630
>SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)
Length = 407
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 459 LDEIKKKLTTCGQPGITHTLQNHRQPQRP 545
L +++K L G+ G+ H + + RQP+RP
Sbjct: 26 LTDLEKALQEVGRVGMKHLIMSKRQPRRP 54
>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
Length = 732
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 139 QEVKDVKLENGNAPGASNGTSSKSEDNALSFKEAFKAFSNLEIPSPMEKPSRSRKATNG 315
Q V+ G AP A TSS + + ++A F+N P P+++P+ + G
Sbjct: 241 QSAAPVQTSFGQAPVAPVQTSSFDPFGSTAPQQASSGFANFSQPQPIQQPAAQSQHQGG 299
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 112 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFKEAFKAFSNLE-IPSP 276
T A +Q + V +K + N P + K +DN +SFK + + F+ + IP P
Sbjct: 468 TQAPTQQTSGLVAPIKPKLINQPITKGCENIKGDDNFISFKNSLQEFAQKKGIPVP 523
>SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048)
Length = 233
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 142 EVKDVKLENGNAPGASNGTSSKSEDNALSFKEAFKAFSNLEIPSPMEKPSRSRKAT 309
E + K E G + G + D A F LE+PSP + P + +KA+
Sbjct: 7 EAQAKKQEESAENGKNKGKGKRKRDEAHQVNRI--TFFFLEVPSPSKSPVKKKKAS 60
>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 360 DTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKL 482
D+ F++L LG+DD + ++D N K D KKKL
Sbjct: 400 DSEQMFQQLNHEVLGVDDDEDSVNDEENNSKTGNDLYKKKL 440
>SB_37025| Best HMM Match : Homeobox (HMM E-Value=1.3e-16)
Length = 154
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -1
Query: 673 YPVT*PDPSTKSFLPAXPFPLPVSSKALPVRTSIFARVCQSIYGRCGCR 527
YP T P P +F P+ P P LPV + RVC CG R
Sbjct: 95 YPGTPPPPMYPAFPPSFPSSPPPEYPGLPVSSP--GRVCTRPDCNCGGR 141
>SB_14695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -1
Query: 673 YPVT*PDPSTKSFLPAXPFPLPVSSKALPVRTSIFARVCQSIYGRCGCR 527
YP T P P +F P+ P P LPV + RVC CG R
Sbjct: 148 YPGTPPPPMYPAFPPSFPSSPPPEYPGLPVSSP--GRVCTRPDCNCGGR 194
>SB_8032| Best HMM Match : IBB (HMM E-Value=0.46)
Length = 191
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 142 EVKDVKLENGNAPGASNGTSSKSEDNALSFKEAFKAFSNLEIPSPMEKPSRSRKAT 309
E + K E G + G + D A F LE+PSP + P + +KA+
Sbjct: 7 EAQAKKQEESAENGKNKGKGKRKRDEAHQVNRI--TFFFLEVPSPSKSPVKKKKAS 60
>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 264 DPKSDGKAITLSQSDKWMKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAK 443
+PKS T + K + K G+K HFKK V G D ++ + D +
Sbjct: 461 EPKSKSNISTFDKKQK-SRLRKFSKGRKDDILKAKRHFKKGHKVSEGADAHESYEDSRSS 519
Query: 444 NKKV 455
++ V
Sbjct: 520 SENV 523
>SB_19986| Best HMM Match : bZIP_2 (HMM E-Value=5.7e-17)
Length = 278
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 230 SRKPSRRFQIWRSQVRWKSHHALAKRQ-MDETSQSYXWKENNNN 358
S+ PS Q+ R H+++KR MD+ S+ Y K NN
Sbjct: 164 SKLPSIASQLKAPSSRTSRRHSISKRNSMDKHSEEYRQKRERNN 207
>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 187 SNGTSSKSEDNALSFKEAFKAFSNLEIPSPMEKPSRSRKATNG*NKPKLXMERK*QQRTR 366
+NG S +++ +F+E+ K+ ++ EIP P ++ G + P + ++ TR
Sbjct: 625 TNGDSQETDSRKGTFQESRKSLTDFEIPIDTRNPFQTLDRKGGYDNPGQASDDDEKETTR 684
>SB_55443| Best HMM Match : Homeobox (HMM E-Value=2.3e-26)
Length = 245
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = -1
Query: 673 YPVT*PDPSTKSFLPAXPFPLPVSSKALPVRTSIFARVCQSIYGRCGCR 527
YP T P P +F P P P LPV + RVC CG R
Sbjct: 185 YPGTPPPPMYPAFPPIFPSSPPPEYPGLPVSSP--GRVCNRPDCNCGGR 231
>SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07)
Length = 766
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 387 KSVKLGIDDYQKFLDDLAKNKKVELDE 467
K V++ D+ + FLD LAK K+E DE
Sbjct: 719 KLVRVSSDENELFLDYLAKRAKLERDE 745
>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = -1
Query: 673 YPVT*PDPSTKSFLPAXPFPLPVSSKALPVRTSIFARVCQSIYGRCGCR 527
YP T P P +F P P P LPV + RVC CG R
Sbjct: 185 YPGTPPPPMYPAFPPIFPSSPPPEYPGLPVSSP--GRVCNRPDCNCGGR 231
>SB_5615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 115 DAAVEQVTQEVKDV-KLENGNAPGASNGTSSKSEDNALSFKE 237
D ++V V ++ L+NGN + NGTS +ED L+ E
Sbjct: 21 DVTAQEVEDSVSNLLSLQNGNYFLSLNGTSPLTEDKYLNLSE 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,812,901
Number of Sequences: 59808
Number of extensions: 401486
Number of successful extensions: 1275
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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