Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021029X
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.092
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)                 29   1.5  
SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)                  27   6.1  
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.0  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   26   8.0  

>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 32.7 bits (71), Expect = 0.092
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 262 QPFNKNFYDPHPTVLKRS 315
           +PFNKNFY+ HP + K+S
Sbjct: 475 KPFNKNFYEEHPEITKQS 492


>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
          Length = 1199

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 224 QNMRRPDWDSVHSNLSTKTFMIHILQFSKD 313
           +N RR  WDS HSN+S  +   H+  F  D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795


>SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 95   PWKRWSKFGGGNKFGD 142
            PW+RW +   G KFG+
Sbjct: 1123 PWRRWDRIVCGGKFGE 1138


>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
          Length = 1803

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 177 LEDLEDLVGKKDSLEVRTCVAQIGILFTPTFQQ 275
           L D E+ V  K +L   TC+A++G+L  PT  +
Sbjct: 496 LSDTEEFVVCK-ALNALTCLAELGLLQKPTLHE 527


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 262 QPFNKNFYDPHPTVLKRSPYGGAEYRXNHE 351
           QPF K+FY   P + K +P    E+R + E
Sbjct: 62  QPFRKDFYVEVPELAKMTPEETDEFRLSLE 91


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 224  QNMRRPDWDSVHSNLSTKTFMIHILQFSKD 313
            +NM +P W      +S   F+ ++L F KD
Sbjct: 3073 RNMLKPSWSESLKLMSKSDFLNNLLNFDKD 3102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,803,432
Number of Sequences: 59808
Number of extensions: 156137
Number of successful extensions: 346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)