Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0034
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 1e-40
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0) 58 7e-09
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_58786| Best HMM Match : Aldedh (HMM E-Value=0) 48 7e-06
SB_14803| Best HMM Match : Aldedh (HMM E-Value=4.9e-08) 46 2e-05
SB_32640| Best HMM Match : Aldedh (HMM E-Value=4.9e-08) 46 2e-05
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 43 2e-04
SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08) 43 3e-04
SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12) 40 0.001
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0) 39 0.003
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_52934| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_52238| Best HMM Match : UPF0060 (HMM E-Value=2.2) 30 2.1
SB_10851| Best HMM Match : Chitin_bind_1 (HMM E-Value=4.4) 29 2.7
SB_59744| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_42840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_7965| Best HMM Match : Galactosyl_T (HMM E-Value=0.2) 28 8.3
>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 163 bits (396), Expect = 1e-40
Identities = 84/173 (48%), Positives = 111/173 (64%), Gaps = 3/173 (1%)
Frame = +1
Query: 4 PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
PTIL V P+D VME+EIFGPILPIV +++ +AI FIN+R+ PL LY+FSN+ K
Sbjct: 286 PTILTGVKPSDPVMENEIFGPILPIVSVDSLDDAIDFINDRDKPLALYIFSNKQESIKRI 345
Query: 184 TEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKKSCLKKNFAAIG 363
E T SG ND ++ +ETLPFGGVG SG+GAYHGK + + FTHKK C+ K +
Sbjct: 346 QENTSSGGFCANDVVIHAALETLPFGGVGGSGMGAYHGKHSFEAFTHKKGCMVKKLSM-- 403
Query: 364 EKLASGRYPPYTEGNLKFITAL---MKKRHGPSLKYLPHFMAFALGAAISYGI 513
E + S RYPPY E NL +IT L +KR G + Y+P + + A + G+
Sbjct: 404 EAMNSIRYPPYKEKNLSWITFLAGRSEKREG--VVYIPLMLLGVVCAIMLKGL 454
>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 528
Score = 58.0 bits (134), Expect = 7e-09
Identities = 32/110 (29%), Positives = 52/110 (47%)
Frame = +1
Query: 1 EPTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKL 180
EPT+L V+P V ++E FGP+ P+V + EA+ N + L Y +S +
Sbjct: 366 EPTVLTDVSPDMLVCKEETFGPLAPLVRFKTEAEAVAIANSTQSGLAGYFYSQDLSQVWR 425
Query: 181 FTEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKK 330
E G + +N++++ E PFGG SG+G + I + K
Sbjct: 426 VAEALEVGLVGVNESMI--STEVAPFGGWKQSGLGIEGSRYGIHEYLETK 473
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 51.2 bits (117), Expect = 8e-07
Identities = 28/100 (28%), Positives = 48/100 (48%)
Frame = +1
Query: 4 PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
PT++ V P K++ +E+FGP+L ++ A EA+ N L V++ ++
Sbjct: 989 PTLITNVQPVSKIVMEEVFGPVLVVLTFRTAKEAVAIANNTNFGLGASVWTENLSLAMEV 1048
Query: 184 TEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKK 303
++G++ IN +F FGG SG G GK+
Sbjct: 1049 GLSMKAGAVWINGHNLFDA--AAGFGGYRESGYGRDGGKE 1086
>SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 421
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +1
Query: 4 PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
P +L ++ +EIF P++ + E I N+ L Y +S +
Sbjct: 306 PVVLGNCNSNMRIFNEEIFAPVIAVYKFSTDEEVINLANKTRFGLASYFYSQNTSRVFNI 365
Query: 184 TEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTH-KKSCLKKN 348
++ + G + IN ++ E +PFGGV +SG G +D + + K CL N
Sbjct: 366 ADELQYGIVGINSGLI--SAENVPFGGVKHSGFGREGSFYGLDDYINIKYVCLDIN 419
>SB_14803| Best HMM Match : Aldedh (HMM E-Value=4.9e-08)
Length = 195
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 4 PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
PT+L+ VTP ++EIFGP+L + + +A++ IN + +F+ I + F
Sbjct: 119 PTVLSNVTPEMTCYKEEIFGPVLVALNADTLEDAVEIINRNPYGNGTAIFTKSGAIARKF 178
Query: 184 TEQTRSGSISIN 219
++ G I IN
Sbjct: 179 AQKANVGQIGIN 190
>SB_32640| Best HMM Match : Aldedh (HMM E-Value=4.9e-08)
Length = 195
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 4 PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
PT+L+ VTP ++EIFGP+L + + +A++ IN + +F+ I + F
Sbjct: 119 PTVLSNVTPEMTCYKEEIFGPVLVALNADTLEDAVEIINRNPYGNGTAIFTKSGAIARKF 178
Query: 184 TEQTRSGSISIN 219
++ G I IN
Sbjct: 179 AQKANVGQIGIN 190
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/94 (28%), Positives = 46/94 (48%)
Frame = +1
Query: 4 PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
P ++A+ T V+++EIFGP++ ++ + EA+ N L +F+ N
Sbjct: 638 PCVMAECTDDMTVVKEEIFGPVMTVLTFQTEEEAVTRANNTTFGLAGGIFTRDLNRAHRV 697
Query: 184 TEQTRSGSISINDTIMFYGVETLPFGGVGNSGIG 285
++G+ IN + VE +PFGG SG G
Sbjct: 698 IGSLQAGTCWIN-SFNITPVE-VPFGGYKMSGFG 729
>SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08)
Length = 266
Score = 42.7 bits (96), Expect = 3e-04
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Frame = +1
Query: 4 PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFS-NQYNIQKL 180
P IL V K+ E+E FGP++PI+ ++ E + +++E + + +FS N ++ L
Sbjct: 128 PAILYPVNSTMKIYEEEQFGPVVPILSFKDIQEPLDYVSESNYGQQVSLFSKNPSSLAPL 187
Query: 181 FTEQTRS-GSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKKSCLKKNFAA 357
++IN T G + LPF G +S + + TF+ ++ + A
Sbjct: 188 IDSLVNQVCRVNIN-TKCQRGPDVLPFVGRKDSAVSTLSVYDALRTFS-IRTLVAFRSNA 245
Query: 358 IGEKLAS 378
I +K+ S
Sbjct: 246 INDKILS 252
>SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12)
Length = 211
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 1 EPTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKL 180
+PT+ + V ++ ++EIFGP++ I ++ + I+ N+ + L V + +
Sbjct: 114 QPTVFSDVQDNMRIAQEEIFGPVMQIFRFKDMNDIIERANKTTYGLAGSVMTKNLENALM 173
Query: 181 FTEQTRSGSISIN--DTIMFYGVETLPFGGVGNSGIG 285
+ R G++ +N D + PFGG SG+G
Sbjct: 174 LSNSLRVGTVWVNCYDALS----AQAPFGGYKMSGVG 206
>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 523
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +1
Query: 1 EPTILAKVTPADKVMEDEIFGPIL-PIVCIENAYEAIKFI--NEREHPLVLYVFSNQYNI 171
EPTI+ P +K+M++EIFGP++ V + Y+ + + N E L +F
Sbjct: 390 EPTIVETSNPYNKMMKEEIFGPVVCAYVYPDEKYKEMMDVVDNTNEFSLTGAIFGEDPTF 449
Query: 172 QKLFTEQTRS--GSISINDTIMFYGVETLPFGGVGNSG 279
+ + R G+ +ND V PFGG SG
Sbjct: 450 IEEARDALRESCGNFYVNDKCTGSVVAQQPFGGARMSG 487
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +1
Query: 1 EPTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKL 180
+PT+ + VT ++ ++EIFGP+ ++ ++ E I+ N + L VF+ +
Sbjct: 690 QPTVFSDVTDDMRIAKEEIFGPVQQLIKFKSVDEVIERANNTTYGLAAGVFTKNIDTAIA 749
Query: 181 FTEQTRSGSI 210
+ R+G++
Sbjct: 750 VSSGLRAGTV 759
>SB_52934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 1 EPTILAKVTPADKVMEDEIFGPILPIVCIENA--YEAIKFINEREHPLVLYVFSNQYNIQ 174
EP + V + ++E FGP++ I ++ ++ N E+ L VF+ +
Sbjct: 144 EPAVFTNVEDDMFIAKEESFGPVVIISKFDDGDVEGVLESANGTEYGLASGVFTKDMSKA 203
Query: 175 KLFTEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKK 330
+ +G+ +N T V PFGG SG G G + ++ + K
Sbjct: 204 LRVADALEAGTCFVN-TYNKTDVAA-PFGGCKQSGFGKDLGMEALNEYLKTK 253
>SB_52238| Best HMM Match : UPF0060 (HMM E-Value=2.2)
Length = 136
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +1
Query: 7 TILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLFT 186
TI ++V + + E++G + I Y ++ I+ + V + S Y +
Sbjct: 11 TISSEVYGGVRTISSEVYGGVRTID--SEVYGGVRTIDSEVYGGVRTIDSEVYGEVRTID 68
Query: 187 EQTRSGSISINDTIMFYGVETLP---FGGVGNSGIGAYHGKKTIDT 315
+ G +I D+ ++ GV T+ +GGV Y G KTID+
Sbjct: 69 SEVYGGVRTI-DSEVYGGVRTIDSEVYGGVRTIDSEVYGGVKTIDS 113
>SB_10851| Best HMM Match : Chitin_bind_1 (HMM E-Value=4.4)
Length = 186
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +1
Query: 88 ENAYEAIKFINEREHPLVLYVFSNQYNIQKLFTEQTRSGSISINDTIMFYGVETLPFGGV 267
+N EAI N+ ++ L V+S K + R+G + +N ++ PFGG
Sbjct: 4 QNLDEAIALANQSDYGLSGGVWSADLEKAKQVAAKLRTGMVHLNGAMV---DARAPFGGY 60
Query: 268 GNSGIG 285
SG+G
Sbjct: 61 KQSGLG 66
>SB_59744| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 295 GKKTI-DTFTHKKSCLKKNFAAIGEKLASGRYPPYTEGNLKFITALMKKRHGPSL-KYLP 468
G+K + + FT S N+A + +A G YP N + K+RH +L KY
Sbjct: 437 GRKVLREDFTKDPSGNAMNYAKMTAAVAGGNYPAKFLSNDESPALAEKERHDKALEKYQQ 496
Query: 469 HFMAFALGAAI 501
+ AF A I
Sbjct: 497 DYAAFFHAARI 507
>SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 305 VFFPWYAPIPLLPTPPNGRVSTP*NMIVSLILMLP 201
+ FP+Y P LLP+PP + P N++ SL + P
Sbjct: 489 LLFPYYVPSSLLPSPP---LLRPSNLLPSLPSLRP 520
>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1615
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/87 (27%), Positives = 36/87 (41%)
Frame = +3
Query: 264 CG*QRYRCVPRKEDYRYIHTQKELPQEELRCYWRETGFRPLPSLHRRKLEIHNGTNEETS 443
C + C P + RY +T KELP R R F S +R LE+ N+ +
Sbjct: 719 CASELCACRPSDKTLRYRYTLKELPSMLYRLKQRAESFDNWASGVKRILEL--ADNKVSV 776
Query: 444 RALAKVSATLHGLRSRSCYILRYLRMA 524
L ++ T + C +L L+ A
Sbjct: 777 AELKELVTTAEQSQFPECDLLTLLKGA 803
>SB_42840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 250 LPFGGVGNSGIGAYHGKKTIDTFTHKKS-CLK 342
+PFGG SG+G ++++ FT K+ C+K
Sbjct: 30 MPFGGTKMSGVGREGTHESLEFFTESKTICIK 61
>SB_7965| Best HMM Match : Galactosyl_T (HMM E-Value=0.2)
Length = 345
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 220 DTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTF 318
D ++G LPFGG + G G K+T+ F
Sbjct: 193 DKSHYFGRHFLPFGGYNDGGAGYVFSKETLIRF 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,318,865
Number of Sequences: 59808
Number of extensions: 448766
Number of successful extensions: 1013
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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